Hi, I would like to know what package(s) can aid as much as possible in an automatic manner to obtain the coordinates for gene structures (introns, exons, UTRs and etc) and to draw them ? Thanks Daren _________________________________________________________________ [[elided Hotmail spam]]

On Wed, Nov 12, 2008 at 9:45 PM, Daren Tan <daren76@hotmail.com> wrote: > > Hi, > > I would like to know what package(s) can aid as much as possible in an > automatic manner to obtain the coordinates for gene structures (introns, > exons, UTRs and etc) and to draw them ? > See the biomaRt package for finding coordinates. You could look at rtracklayer and GenomeGraphs for other solutions including drawing the gene structures. Sean [[alternative HTML version deleted]]