Hi, I have been doing gene expression andlysis for some time. But I have not not sure how does one analyze the GEO GSM files in cases where the .CEL files are not available using bioconductor or another software. It would be great if someone direct me to a tutorial or reference. Thanks, Amin [[alternative HTML version deleted]]

On Sun, Nov 23, 2008 at 10:51 AM, Amin Momin <gtg269c@mail.gatech.edu>wrote: > Hi, > I have been doing gene expression andlysis for some time. But I have not > not sure how does one analyze the GEO GSM files in cases where the .CEL > files are not available using bioconductor or another software. It would be > great if someone direct me to a tutorial or reference. Hi, Amin. See the GEOquery package and vignette as a start. Sean [[alternative HTML version deleted]]