biomaRt with multiple databases/datasets?
0
0
Entering edit mode
T Joshi ▴ 90
@t-joshi-3142
Last seen 10.3 years ago
Hi, I was wondering if it is possible to use biomaRt package with multiple databases and hence datasets. I want to retrieve GO information using ensembl geneIDs. I use the following : attributes=c("ensembl_gene_id","go_biological_process_id","go_cellular _component_id", "go_biological_process_id", "go_biological_process_linkage_type", "go_cellular_component_linkage_type","go_molecular_function_linkage_ty pe"), and filters="ensembl_gene_id", for a "mart" object which uses ensembl database. I would like to see the names of pathways and reactions in which this gene is involved. Could we do so using biomaRt? cheers, Josh
Pathways GO biomaRt Pathways GO biomaRt • 926 views
ADD COMMENT

Login before adding your answer.

Traffic: 786 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6