Where to download annotation package for Agilent human CGH 44B
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Daren Tan ▴ 190
@daren-tan-3105
Last seen 8.0 years ago
Does anyone know where to download annotation package for Agilent human CGH 44B. I have an urgent need for it. Please help. Thanks Daren _________________________________________________________________ [[elided Hotmail spam]]
Annotation CGH Annotation CGH • 770 views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 6.0 years ago
United States
Hi Daren, We don't have a package built for this platform, but we do provide some software that should allow you to easily make an annotation package for any package where the manufacturer is willing to provide an initial probe to gene mapping. You will need to use the SQLForge code in the AnnotationDbi package to do that. You can find a vignette with instructions here: http://www.bioconductor.org/packages/devel/bioc/html/AnnotationDbi.htm l However I also note that this is a CGH platform. And in that case you might want to also look at the oligo package and the pdInfoBuilder package to make the probe level data for this package. I can't be sure, however, because you have not told us what you want to do. Marc Daren Tan wrote: > Does anyone know where to download annotation package for Agilent human CGH 44B. I have an urgent need for it. Please help. > > Thanks > Daren > > > > > _________________________________________________________________ > [[elided Hotmail spam]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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