Question: Where to download annotation package for Agilent human CGH 44B
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gravatar for Daren Tan
10.8 years ago by
Daren Tan160
Daren Tan160 wrote:
Does anyone know where to download annotation package for Agilent human CGH 44B. I have an urgent need for it. Please help. Thanks Daren _________________________________________________________________ [[elided Hotmail spam]]
annotation cgh • 654 views
ADD COMMENTlink modified 10.8 years ago by Marc Carlson7.2k • written 10.8 years ago by Daren Tan160
Answer: Where to download annotation package for Agilent human CGH 44B
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gravatar for Marc Carlson
10.8 years ago by
Marc Carlson7.2k
United States
Marc Carlson7.2k wrote:
Hi Daren, We don't have a package built for this platform, but we do provide some software that should allow you to easily make an annotation package for any package where the manufacturer is willing to provide an initial probe to gene mapping. You will need to use the SQLForge code in the AnnotationDbi package to do that. You can find a vignette with instructions here: http://www.bioconductor.org/packages/devel/bioc/html/AnnotationDbi.htm l However I also note that this is a CGH platform. And in that case you might want to also look at the oligo package and the pdInfoBuilder package to make the probe level data for this package. I can't be sure, however, because you have not told us what you want to do. Marc Daren Tan wrote: > Does anyone know where to download annotation package for Agilent human CGH 44B. I have an urgent need for it. Please help. > > Thanks > Daren > > > > > _________________________________________________________________ > [[elided Hotmail spam]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >
ADD COMMENTlink written 10.8 years ago by Marc Carlson7.2k
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