Hi Sean, Thanks a lot! I just figured it out. Have a good one. Allen On Tue, Feb 24, 2009 at 7:29 AM, Sean Davis <seandavi@gmail.com> wrote: > > > On Mon, Feb 23, 2009 at 10:38 PM, ss <affysnp@gmail.com> wrote: > >> Hi all, >> >> I am trying to map a GO term (GO:0043473) which I am interested >> to Illumina probe ID. This GO term is available at: >> >> http://amigo.geneontology.org/cgi-bin/amigo/term- details.cgi?term=GO:0043473&session_id=7969amigo1235444600 >> >> >> The code I have tried so far is: >> >> >library(lumi) >> >library(lumiHumanAll.db) >> > m<-mget("0043473",lumiHumanAllGO2PROBE,ifnotfound = NA) >> > m >> $`0043473` >> [1] NA >> > > Hi, Allen. > > The keys in GO are all of the form: > > GO:0043473 > > So mget('GO:0043473' ...) should work. > > Sean > > >> >> It is weird that I end up with nothing. I did try lumiHumanAllGO2ALLPROBES >> though, but no luck. >> >> > m<-mget("0043473",lumiHumanAllGO2ALLPROBES,ifnotfound = NA) >> > m >> $`0043473` >> [1] NA >> >> Interestingly enough, I had no problem with mapping KEGG ID to probe ID >> by using "lumiHumanAllPATH2PROBE". >> >> If anybody can help me figure it out, that will be greatly appreciated. >> Have a good one. >> >> Allen >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > [[alternative HTML version deleted]]