Entering edit mode
Wei, Wenbin
▴
50
@wei-wenbin-315
Last seen 10.2 years ago
Hi, all,
I would like to install gcrma on my PC but have not got a clue how to
do
that after downloading it from the provided link. Please give me some
help.
Cheers,
Dr. Wenbin Wei
Division of Cancer Studies
University of Birmingham
Birmingham,
B15 2TT
-----Original Message-----
From: Zhijin Wu [mailto:zwu@jhsph.edu]
Sent: 15 September 2003 21:58
To: Zhijin Wu
Cc: bioconductor@stat.math.ethz.ch
Subject: Re: [BioC] gcrma bug fixed--currently available from CVS
Sorry I didn't make it clear..
currently you will need to get it from the "developer page" link from
bioconductor (at the bottom of the menu, or
http://franz.stat.wisc.edu/cgi-
bin/viewcvs.cgi/Rpacks/gcrma/?cvsroot=Biocond
uctor
On Mon, 15 Sep 2003, Zhijin Wu wrote:
> We've just updated the gcrma package. The bug due to sequence
> matching mistake has been fixed.
> Thanks to Akil Merchant and Michael McDonald who brought it to our
> attention, and thank Wolfgang for explaining the precise way of
matching
> those!
>
> Jean
> On Mon, 15 Sep 2003, Michael McDonald wrote:
>
> > Hello,
> > Does anyone know why gcrma wouldn't work with the moe chips when
it
> > works for the mgu74av2 chipset? Any input is appreciated. the
output
> > is:
> > WORKS!
> > > gcrmadata<-gcrma(gcdata)
> > Loading required package: mgu74av2probe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...done.
> > 12488 ids to be processed
> > .........
> >
> >
> > ????
> > > gcrmadata<-gcrma(data)
> > Loading required package: moe430bprobe
> > Loading required package: matchprobes
> > background correction: gcrma
> > normalization: quantiles
> > PM/MM correction : pmonly
> > expression values: medianpolish
> > background correcting...done.
> > normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign
function
> > call (arg 1)
> >
> > best,
> > michael
> >
> > Michael J. McDonald Ph.D.
> > Universite de Geneve c/o Duboule Lab
> > Department of Zoologie and Biologie Animale
> > Quai Ernest-Ansermet 30
> > CH-1211 Geneve 4
> > phone 41.22.379.67.94
> > fax 41.22.379.67.95
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor@stat.math.ethz.ch
> > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
> >
>
>
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