Question: gcrma bug fixed--currently available from CVS
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gravatar for Wei, Wenbin
16.2 years ago by
Wei, Wenbin50
Wei, Wenbin50 wrote:
Hi, all, I would like to install gcrma on my PC but have not got a clue how to do that after downloading it from the provided link. Please give me some help. Cheers, Dr. Wenbin Wei Division of Cancer Studies University of Birmingham Birmingham, B15 2TT -----Original Message----- From: Zhijin Wu [mailto:zwu@jhsph.edu] Sent: 15 September 2003 21:58 To: Zhijin Wu Cc: bioconductor@stat.math.ethz.ch Subject: Re: [BioC] gcrma bug fixed--currently available from CVS Sorry I didn't make it clear.. currently you will need to get it from the "developer page" link from bioconductor (at the bottom of the menu, or http://franz.stat.wisc.edu/cgi- bin/viewcvs.cgi/Rpacks/gcrma/?cvsroot=Biocond uctor On Mon, 15 Sep 2003, Zhijin Wu wrote: > We've just updated the gcrma package. The bug due to sequence > matching mistake has been fixed. > Thanks to Akil Merchant and Michael McDonald who brought it to our > attention, and thank Wolfgang for explaining the precise way of matching > those! > > Jean > On Mon, 15 Sep 2003, Michael McDonald wrote: > > > Hello, > > Does anyone know why gcrma wouldn't work with the moe chips when it > > works for the mgu74av2 chipset? Any input is appreciated. the output > > is: > > WORKS! > > > gcrmadata<-gcrma(gcdata) > > Loading required package: mgu74av2probe > > Loading required package: matchprobes > > background correction: gcrma > > normalization: quantiles > > PM/MM correction : pmonly > > expression values: medianpolish > > background correcting...done. > > normalizing...done. > > 12488 ids to be processed > > ......... > > > > > > ???? > > > gcrmadata<-gcrma(data) > > Loading required package: moe430bprobe > > Loading required package: matchprobes > > background correction: gcrma > > normalization: quantiles > > PM/MM correction : pmonly > > expression values: medianpolish > > background correcting...done. > > normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign function > > call (arg 1) > > > > best, > > michael > > > > Michael J. McDonald Ph.D. > > Universite de Geneve c/o Duboule Lab > > Department of Zoologie and Biologie Animale > > Quai Ernest-Ansermet 30 > > CH-1211 Geneve 4 > > phone 41.22.379.67.94 > > fax 41.22.379.67.95 > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > > _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
cancer mgu74av2 gcrma gene.e • 466 views
ADD COMMENTlink modified 16.2 years ago by John Zhang2.9k • written 16.2 years ago by Wei, Wenbin50
Answer: gcrma bug fixed--currently available from CVS
0
gravatar for John Zhang
16.2 years ago by
John Zhang2.9k
John Zhang2.9k wrote:
>I would like to install gcrma on my PC but have not got a clue how to do >that after downloading it from the provided link. Please give me some help. Open an R window and click the menu "Packages" then "Install package(s) from local file(s)". > >Cheers, > >Dr. Wenbin Wei >Division of Cancer Studies >University of Birmingham >Birmingham, >B15 2TT > > >-----Original Message----- >From: Zhijin Wu [mailto:zwu@jhsph.edu] >Sent: 15 September 2003 21:58 >To: Zhijin Wu >Cc: bioconductor@stat.math.ethz.ch >Subject: Re: [BioC] gcrma bug fixed--currently available from CVS > >Sorry I didn't make it clear.. >currently you will need to get it from the "developer page" link from >bioconductor (at the bottom of the menu, or > >http://franz.stat.wisc.edu/cgi- bin/viewcvs.cgi/Rpacks/gcrma/?cvsroot=Biocond >uctor > > > >On Mon, 15 Sep 2003, Zhijin Wu wrote: > >> We've just updated the gcrma package. The bug due to sequence >> matching mistake has been fixed. >> Thanks to Akil Merchant and Michael McDonald who brought it to our >> attention, and thank Wolfgang for explaining the precise way of matching >> those! >> >> Jean >> On Mon, 15 Sep 2003, Michael McDonald wrote: >> >> > Hello, >> > Does anyone know why gcrma wouldn't work with the moe chips when it >> > works for the mgu74av2 chipset? Any input is appreciated. the output >> > is: >> > WORKS! >> > > gcrmadata<-gcrma(gcdata) >> > Loading required package: mgu74av2probe >> > Loading required package: matchprobes >> > background correction: gcrma >> > normalization: quantiles >> > PM/MM correction : pmonly >> > expression values: medianpolish >> > background correcting...done. >> > normalizing...done. >> > 12488 ids to be processed >> > ......... >> > >> > >> > ???? >> > > gcrmadata<-gcrma(data) >> > Loading required package: moe430bprobe >> > Loading required package: matchprobes >> > background correction: gcrma >> > normalization: quantiles >> > PM/MM correction : pmonly >> > expression values: medianpolish >> > background correcting...done. >> > normalizing...Error in as.vector(data) : NA/NaN/Inf in foreign function >> > call (arg 1) >> > >> > best, >> > michael >> > >> > Michael J. McDonald Ph.D. >> > Universite de Geneve c/o Duboule Lab >> > Department of Zoologie and Biologie Animale >> > Quai Ernest-Ansermet 30 >> > CH-1211 Geneve 4 >> > phone 41.22.379.67.94 >> > fax 41.22.379.67.95 >> > >> > _______________________________________________ >> > Bioconductor mailing list >> > Bioconductor@stat.math.ethz.ch >> > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >> > >> >> > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
ADD COMMENTlink written 16.2 years ago by John Zhang2.9k
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