exonmap and splicing index
0
0
Entering edit mode
@mathieu-parent-3348
Last seen 8.4 years ago
Hi list ! I am using the exonmap package. I did every steps and I now have a list of genes that have at least on significant differential expressed exon (sigs.exon) I want to calculate the splicing index as explained but it looks like the computer enters a loop and jam there. I come back and everytime it's killed. I use a common computer (32Gb RAM 64bit massive machine) Here is the function I used > si.sigs <- si(rma.data, sigs.gene, "group", c("a","b")) where rma.data is the output of the RMA I ran before limma (length sigs.gene is the output of the probeset.to.gene function on the limma filtered significant list. (length 22 000) Any ideas ? Thanks ! Mathieu McGill University Dept. Neurology and Neurosurgery Dept. Bioinformatics [[alternative HTML version deleted]]
limma exonmap limma exonmap • 602 views
ADD COMMENT

Login before adding your answer.

Traffic: 322 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6