Dear all, j'using library xps for Human Exon 1.0 ST array and when j create the root scheme, ha heve the following: Importing </home> as <huex-1_0-st-v2.cxy>... <6553600> records imported...Finished New dataset <huex-1_0-st-v2> is added to Content... Importing </home> as <huex-1_0-st-v2.anp>... Number of probesets is <1425647>. <1425647> records read...Finished <1404858> records imported...Finished <1063119> exon annotations imported. Importing </home> as <huex-1_0-st-v2.scm>... Reading data from input file... Number of probesets is <1432143>. Note: Number of annotated probesets <1425647> is not equal to number of probesets <1432143>. Does someone know why? Annamaria Carissimo -- Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon Remember that it is always possible to send your donation Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx

Dear Annamaria, The output you get is the expected output, so everything is ok! There is no error or warning message, this is simply a note that I added that the number of annotated probesets is less than the number of probesets in the pgf-file, i.e. Affymetrix did not list all probesets in its annotation file. Best regards Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l: cstrato at aon.at _._._._._._._._._._._._._._._._._._ carissimo at tigem.it wrote: > Dear all, > > j'using library xps for Human Exon 1.0 ST array and when j create the root > scheme, ha heve the following: > > > Importing > </home> > as <huex-1_0-st-v2.cxy>... > <6553600> records imported...Finished > New dataset <huex-1_0-st-v2> is added to Content... > Importing > </home> > as <huex-1_0-st-v2.anp>... > Number of probesets is <1425647>. > <1425647> records read...Finished > <1404858> records imported...Finished > <1063119> exon annotations imported. > Importing > </home> > as <huex-1_0-st-v2.scm>... > Reading data from input file... > Number of probesets is <1432143>. > Note: Number of annotated probesets <1425647> is not equal to number of > probesets <1432143>. > > > Does someone know why? > > Annamaria Carissimo > > > -- > Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon > Remember that it is always possible to send your donation > > Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > >