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Peter Smith
▴
10
@peter-smith-3417
Last seen 10.3 years ago
Hi List,
I've got an Affy timecourse experiment with 8 timepoints and I'm
interested
in finding which transcription factors (TF) are controling the
expression of
a particular gene (hk1).
I don't know if there's any tool in Bionconductor that might allow me
to do
this? Or is there a freely accessible database that will tell me which
TFs
are know to control this gene, or even a tool that could infer such a
result.
I though it might be useful to look at genes that have a strong
correlation
in expression profile with hk1 over the 8 timepoints and compare what
TFs
are common to all (or many) of those genes? But again I'm not sure if
or
where the TF information is available?
Regards,
Peter.
--
Dr. Peter Smith
Dept. of Biostatistics
National University of Ireland
Maynooth
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