problem with "ls" command
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anupam sinha ▴ 270
@anupam-sinha-3207
Last seen 8.2 years ago
Hi all , I am facing some problems with 'ls' command. Whenever I use it I get the following error : ls("KEGG.db") Error in as.environment(pos) : no item called "KEGG.db" on the search list and this is true for any package. Can anything be done ? Regards, Anupam [[alternative HTML version deleted]]
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@anna-freni-sterrantino-2847
Last seen 8.2 years ago
Hi, If you have installed KEGG.db correctly as: source("http://bioconductor.org/biocLite.R") biocLite("KEGG.db") and then in an R session you can type library("KEGG.db") ls("package:KEGG.db") [1] "KEGG" "KEGG_dbconn" "KEGG_dbfile" "KEGG_dbInfo" [5] "KEGG_dbschema" "KEGGENZYMEID2GO" "KEGGEXTID2PATHID" "KEGGGO2ENZYMEID" [9] "KEGGMAPCOUNTS" "KEGGPATHID2EXTID" "KEGGPATHID2NAME" "KEGGPATHNAME2ID" > Hope that this help! Cheers Anna Anna Freni Sterrantino Ph.D Student Department of Statistics University of Bologna, Italy via Belle Arti 41, 40124 BO. ________________________________ Da: anupam sinha <anupam.contact@gmail.com> A: Bioconductor@stat.math.ethz.ch Inviato: Venerdì 29 maggio 2009, 9:01:12 Oggetto: [BioC] problem with "ls" command Hi all , I am facing some problems with 'ls' command. Whenever I use it I get the following error : ls("KEGG.db") Error in as.environment(pos) : no item called "KEGG.db" on the search list and this is true for any package. Can anything be done ? Regards, Anupam [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
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