Important KEGGgraph update (parse issue solved)
0
0
Entering edit mode
@jitao-david-zhang-3188
Last seen 5.7 years ago
Hello dear Bioconductor users, Due to an update of XML package which was unfortunately not 100% back-compatible (the xmlChildren() function returns list() instead of NULL in case of child-less xml object), the KEGGgraph package of version 1.1.1 is now not able to parse some KGML files. The issue has been solved in the latest update (version 1.1.2). I am sorry for any inconvenience. If you still have problem to parse KGML files, please update XML package. If the problem still insists, please do not hesistate to report. I thank Matt Settles and Yongjin Li very much for reporting the bug, and especially Matt Settles for the fix. Best wishes, Jitao David Zhang, Author and Maintainer of the KEGGgraph package -- Jitao David Zhang Computational Biology Ph.D. Division of Molecular Genome Analysis DKFZ, Heidelberg D-69120, Germany http://sites.google.com/site/jazzydevzoo/ [[alternative HTML version deleted]]
KEGGgraph KEGGgraph • 547 views
ADD COMMENT

Login before adding your answer.

Traffic: 302 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6