question about ontoCompare() performance change
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Oana VIGY ▴ 80
@oana-vigy-3597
Last seen 6.8 years ago
Dear All, I notice the same problem of time-consuming. Hopping the problem will be resolved soon. Best regards, Oana Jean-Pierre Desvignes a ?crit : > Hello, > > I have the same problem as Scott. When I compared 2 lists of go term (1000 > values for the first list and 4000 for the second list) with the version 1.10 of > gotools, the time to make the process was ~10min. Now I must wait several hours > to compare the same list. I often stop the process before the end. > I try to modify the format of the list that I set in entry, but the result is > the same. I also make the same analysis that was given in example in the > documentation and the time of the process is ~ 1h30 instead of 5min. > While waiting for a solution. > > Thanks > > Jean-Pierre > > PS: Sorry for my english. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > -- ---------------------------------------------------------------------- -- * Oana VIGY* Institut de G?nomique Fonctionnelle UMR 5203 - U661 - CNRS INSERM UM1 UM2 141 rue de la Cardonille 34 094 MONTPELLIER Cedex 5 ---------------------------------------------------------------------- -- Tel: +33 (0)4 67 14 29 40 oana.vigy at igf.cnrs.fr <mailto:oana.vigy at="" igf.cnrs.fr=""> ---------------------------------------------------------------------- -- -- Passerelle antivirus IGF --
GO PROcess goTools GO PROcess goTools • 378 views
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