Annotating Illumina Data from ArrayExpress
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@mdmamunur-rashid-3595
Last seen 10.2 years ago
Dear List, I have downloaded some illumina data from arrayexpress. ArrayExpress seems to add some more text in front of the Illumina probeID which does not allow IlluminaID2nuID(featureNames(eset)) method to convert to NuIds. Is there any way around to this problem. Any help is appreciated. Thanks in advance. regards, Md.Mamunur Rashid
convert ArrayExpress convert ArrayExpress • 1.1k views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 8.3 years ago
United States
Have you looked at: ?sub To see if you can just trim it off? Marc Md.Mamunur Rashid wrote: > Dear List, > I have downloaded some illumina data from arrayexpress. ArrayExpress > seems to add > > some more text in front of the Illumina probeID which does not allow > > IlluminaID2nuID(featureNames(eset)) method to convert to NuIds. Is > there any way > around to this problem. Any help is appreciated. > > Thanks in advance. > > regards, > Md.Mamunur Rashid > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Hi Marc, Thanks it works. Cheers. best regards, Mamun On 11/12/2009 09:24 PM, Marc Carlson wrote: > Have you looked at: > > ?sub > > To see if you can just trim it off? > > Marc > > > > Md.Mamunur Rashid wrote: > >> Dear List, >> I have downloaded some illumina data from arrayexpress. ArrayExpress >> seems to add >> >> some more text in front of the Illumina probeID which does not allow >> >> IlluminaID2nuID(featureNames(eset)) method to convert to NuIds. Is >> there any way >> around to this problem. Any help is appreciated. >> >> Thanks in advance. >> >> regards, >> Md.Mamunur Rashid >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > > [[alternative HTML version deleted]]
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