Some changes related to KEGG SOAP server were not reflected in old versions of BioC. Try updating your R and BioC to the latest version. >X-Original-To: jzhang at jimmy.harvard.edu >Delivered-To: jzhang at jimmy.harvard.edu >X-IronPort-Anti-Spam-Filtered: true >X-IronPort-Anti-Spam-Result: AigBAOa7QUuBhJEPlGdsb2JhbACZA4JIAQEBAQkLCAkTBbk6hDAE >X-IronPort-AV: E=Sophos;i="4.47,499,1257138000"; d="scan'208";a="299054629" >X-SBRS: 4.8 >X-Spam-Checker-Version: SpamAssassin 3.2.5 (2008-06-10) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, score=-6.6 required=5.0 tests=BAYES_00, RCVD_IN_DNSWL_MED autolearn=ham version=3.2.5 >Date: Mon, 28 Dec 2009 13:51:21 +0100 >From: Klemens Vierlinger <klemens.vierlinger at="" ait.ac.at=""> >User-Agent: Thunderbird 2.0.0.23 (Windows/20090812) >MIME-Version: 1.0 >To: <bioconductor at="" stat.math.ethz.ch=""> >X-Tag-Only: YES >X-Filter-Node: phil2.ethz.ch >X-USF-Spam-Level: -- >X-USF-Spam-Status: hits=-2.6 tests=BAYES_00,SPF_PASS >X-USF-Spam-Flag: NO >X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch >X-Mailman-Approved-At: Mon, 04 Jan 2010 18:59:48 +0100 >Subject: [BioC] Is color.pathway.by.objects (KEGGSOAP) working? >X-BeenThere: bioconductor at stat.math.ethz.ch >X-Mailman-Version: 2.1.11 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Unsubscribe: <https: stat.ethz.ch="" mailman="" options="" bioconductor="">, <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="unsubscribe"> >List-Archive: <https: stat.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor at="" stat.math.ethz.ch=""> >List-Help: <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: stat.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="subscribe"> >Content-Transfer-Encoding: 7bit > >Dear All, > >when I execute the example code for 'color.pathway.by.objects' from >KEGGSOAP package, firefox shows me an empty page. >Any suggestions? > >Thanks for the replies! >Klemens > > > > sessionInfo() >R version 2.9.0 (2009-04-17) >i386-pc-mingw32 > >locale: >LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United >Kingdom.1252;LC_MONETARY=English_United >Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252 > >attached base packages: >[1] stats graphics grDevices utils datasets methods base > >other attached packages: >[1] RCurl_0.98-1 bitops_1.0-4.1 KEGGSOAP_1.18.0 > >loaded via a namespace (and not attached): >[1] SSOAP_0.4-6 XML_2.3-0 > > > >-- >KLEMENS VIERLINGER >Staff Scientist >AIT Austrian Institute of Technology GmbH >2444 Seibersdorf | Austria > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084