Hi there, I am trying to analyze microarray data from Affymetrix GeneChip HT- HG_U133A Array and Affymetrix GeneChip HT-HG_U133A_EA Array platforms. Are there any bioconductor packages to perform QC on the chips, do the pre-processing and finally run the analysis on the data? Any help in this regard would be greatly appreciated. Thanks so much, Somnath. _________________________________________________________________ Hotmail: Powerful Free email with security by Microsoft. [[alternative HTML version deleted]]

Hi Somnath, somnath bandyopadhyay wrote: > Hi there, > > > > I am trying to analyze microarray data from Affymetrix GeneChip > HT-HG_U133A Array and Affymetrix GeneChip HT-HG_U133A_EA Array > platforms. Are there any bioconductor packages to perform QC on the > chips, do the pre-processing and finally run the analysis on the > data? Any help in this regard would be greatly appreciated. For pre-processing: http://bioconductor.org/docs/workflows/oligoarrays/ For analysis: http://bioconductor.org/packages/release/DifferentialExpression.html Best, Jim > > > > Thanks so much, > > Somnath. > > _________________________________________________________________ > Hotmail: Powerful Free email with security by Microsoft. > > [[alternative HTML version deleted]] > > _______________________________________________ Bioconductor mailing > list Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor Search the > archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues