Entering edit mode
seth redmond
▴
10
@seth-redmond-3948
Last seen 10.0 years ago
I'm running into lots of errors when I try to install DNAcopy and the
errors aren't suggesting anything obvious to me... This is DNAcopy
1.20 and R v2.10. Any ideas what I might be doing wrong?
(errors below)
-s
* install options are ' --no-html'
* installing *source* package 'DNAcopy' ...
** libs
g77 -fPIC -g -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In subroutine `wtmaxo':
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
^
Invalid type-declaration attribute at (^) -- must be one of:
DIMENSION(array-spec), EXTERNAL, INTRINSIC, PARAMETER, or SAVE
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Invalid type-declaration attribute at (^) -- must be one of:
DIMENSION(array-spec), EXTERNAL, INTRINSIC, PARAMETER, or SAVE
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Invalid type-declaration attribute at (^) -- must be one of:
DIMENSION(array-spec), EXTERNAL, INTRINSIC, PARAMETER, or SAVE
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Invalid type-declaration attribute at (^) -- must be one of:
DIMENSION(array-spec), EXTERNAL, INTRINSIC, PARAMETER, or SAVE
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
^
Expression at (^) has incorrect data type or rank for its context
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bpsmax' at (2)
[initially seen at (1)]
cbsWtstats.f:24:
double precision, allocatable :: bpsmax(:), bpsmin(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bpsmin' at (2)
[initially seen at (1)]
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bb' at (2) [initially
seen at (1)]
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `ibmin' at (2)
[initially seen at (1)]
cbsWtstats.f:26:
integer, allocatable :: bb(:), ibmin(:), ibmax(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `ibmax' at (2)
[initially seen at (1)]
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bssbij' at (2)
[initially seen at (1)]
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bssijmax' at (2)
[initially seen at (1)]
cbsWtstats.f:29:
double precision, allocatable :: bssbij(:), bssijmax(:),
awt(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `awt' at (2) [initially
seen at (1)]
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `bloci' at (2)
[initially seen at (1)]
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `blocj' at (2)
[initially seen at (1)]
cbsWtstats.f:31:
integer, allocatable :: bloci(:), blocj(:), loc(:)
1
cbsWtstats.f:34: (continued):
rn = dfloat(n)
2
Invalid declaration of or reference to symbol `loc' at (2) [initially
seen at (1)]
cbsWtstats.f:44:
allocate(bpsmax(nb), bpsmin(nb))
^
Invalid declaration of or reference to symbol `allocate' at (^)
[initially seen at (^)]
cbsWtstats.f:44:
allocate(bpsmax(nb), bpsmin(nb))
^
Invalid form for assignment statement at (^)
cbsWtstats.f:45:
allocate(bb(nb), ibmin(nb), ibmax(nb))
^
Invalid form for assignment statement at (^)
cbsWtstats.f:46:
allocate(bssbij(nb2), bssijmax(nb2), awt(nb2))
^
Invalid form for assignment statement at (^)
cbsWtstats.f:47:
allocate(bloci(nb2), blocj(nb2), loc(nb2))
^
Invalid form for assignment statement at (^)
cbsWtstats.f:278:
deallocate(bpsmax, bpsmin, bb, ibmin, ibmax)
^
Invalid declaration of or reference to symbol `deallocate' at (^)
[initially seen at (^)]
cbsWtstats.f:278:
deallocate(bpsmax, bpsmin, bb, ibmin, ibmax)
^
Invalid form for assignment statement at (^)
cbsWtstats.f:279:
deallocate(bssbij, bssijmax, bloci, blocj, loc, awt)
^
Invalid form for assignment statement at (^)
cbsWtstats.f:93: confused by earlier errors, bailing out
make: *** [cbsWtstats.o] Error 1
ERROR: compilation failed for package 'DNAcopy'
* removing '/home/snr02/work/R/DNAcopy.Rcheck/DNAcopy'
--
Seth Redmond
Scientific Programmer, VectorBase
Kafatos / Christophides Groups
Div. Cell and Molecular Biology
Imperial College, London
seth.redmond at imperial.ac.uk
--