Agilent data Normalization
0
0
Entering edit mode
Joel Parker ▴ 10
@joel-parker-564
Last seen 9.7 years ago
Hi, I'm using the marray functions to import data from an Agilent scanner. I have no problems until I go to normalize the data (maNormMain). I get the error: > pilot.norm<-maNormMain(pilot.raw) Error: dim<- length of dims do not match the length of object I believe this is happening because the dimensions of the Agilent array as I entered it are: 1 Block/Sector 105 Columns 215 Rows And if I remake the layout with 2 or more Blocks/Sectors everything works fine. I'm guessing that it causes an error with 1 Block b/c it tries to do within-print-tip normalization and this corresponds to a single tip(?). In any case, I've found a work around, but does anyone know the specific reason for this error? If it is related to the within-print-tip normalization, then can I override this and just use global loess normalization? Thanks in advance, Joel
Normalization GO marray Normalization GO marray • 798 views
ADD COMMENT

Login before adding your answer.

Traffic: 621 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6