On Fri, Mar 26, 2010 at 9:08 AM, James W. MacDonald <jmacdon at="" med.umich.edu=""> wrote: > Hi Sean and Neeraj, > > Sean Davis wrote: >> >> On Fri, Mar 26, 2010 at 7:14 AM, neeraj rana <kushrn at="" gmail.com=""> wrote: >>> >>> hi i am getting follwing error in my analysis. >>> >>>> corfit <- duplicateCorrelationMA.bn, ndups = 1, block = biolrep) >>> >>> Loading required package: statmod >>> Error: could not find function "mixedModel2Fit" >>> In addition: Warning message: >>> In library(package, lib.loc = lib.loc, character.only = TRUE, >>> logical.return >>> = TRUE, ?: >>> ?there is no package called 'statmod' >>> i could'nt find any package named statmod.. >> >> Hi, Neeraj. >> >> You managed to install the limma package without one of it's >> dependencies, it appears. ?Perhaps you installed limma using some >> method other than: > > The statmod package isn't a dependency; it is a suggested package, so isn't > installed as a matter of course when using biocLite(). However, Sean's > suggestion will work just as well to add this package: > > biocLite("statmod") Neeraj, sorry for the misinformation. Thanks, Jim, for the clarification. Sean >> >> source('http://bioconductor.org/biocLite.R') >> biocLite('limma') >> >> Try installing limma using the above method. ?The statmod package and >> any other dependencies for limma will be installed as well as limma >> and your problem will likely be solved. >> >> Hope that helps. >> >> Sean >> >> P.S. ?In the future, be sure to include the output of sessionInfo() in >> posts. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > -- > James W. MacDonald, M.S. > Biostatistician > Douglas Lab > University of Michigan > Department of Human Genetics > 5912 Buhl > 1241 E. Catherine St. > Ann Arbor MI 48109-5618 > 734-615-7826 > ********************************************************** > Electronic Mail is not secure, may not be read every day, and should not be > used for urgent or sensitive issues