Question

Error in setQCEnvironment(cdfn)-reg

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NUTAN CHAUHAN ▴ 20

@nutan-chauhan-4028

Last seen 9.7 years ago

Dear Sir, i am doing work on microarray data analysis in R using Bioconductor. i have installed all the default packages and other required packages. when i used "qc(myobject)" , i am getting the following error message: Error in setQCEnvironment(cdfn) : Could not find array definition file ' drosophila2cdf.qcdef '. Simpleaffy does not know the QC parameters for this array type. See the package vignette for details about how to specify QC parameters manually. Nutan Chauhan M.Sc.(Biotechnology) M.Tech.(Bioinformatics) [[alternative HTML version deleted]]

Microarray cdf Microarray cdf • 887 views

ADD COMMENT • link updated 14.0 years ago by Sean Davis 21k • written 14.0 years ago by NUTAN CHAUHAN ▴ 20

score 0 · Answer 1 · 2010-04-18

On Sun, Apr 18, 2010 at 10:21 AM, NUTAN CHAUHAN <nutanbt@yahoo.co.in> wrote: > Dear Sir, > i am doing work on microarray data analysis in R using Bioconductor. i have > installed all the default packages and other required packages. when i > used "qc(myobject)" , i am getting the following error message: > > Error in setQCEnvironment(cdfn) : > Could not find array definition file ' drosophila2cdf.qcdef '. Simpleaffy > does not know the QC parameters for this array type. > See the package vignette for details about how to specify QC parameters > manually. > > Hi, Nutan. So, did you find more errors when you read the package vignette and specified the QC parameters manually, as the error message suggests? If so, please provide the code and the output of sessionInfo() so that folks can be maximally helpful. Sean [[alternative HTML version deleted]]