Entering edit mode
Hello,
I noticed in the report that there is an example like
ShortRead:::.plotCycleBaseCall(perCycle$baseCall)
that produces a graph of the per cycle base calls, but am wondering if
there's a function that can easily give you the underlying table used.
i.e. The table like :
Pos 1 2 3 4 ... ... 36
Base
A 0.224 ...
G 0.276 ...
T 0.251 ...
C ... ...
N ... ...
I also notice that a readAligned object has 'Alignment mismatch
locations' data. Might it be useful to have a similar table to the
above table, but with the the different mutations, instead of the
bases, as the rows of the table ?
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Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia