Question: GOstats
gravatar for Yuan Jian
8.8 years ago by
Yuan Jian250
Yuan Jian250 wrote:
Hello bioconductor experts: now I am using GOstats package to get enriched pathway: > paramsKEGG <- new("KEGGHyperGParams", geneIds = geneCluster,            universeGeneIds = geneUniverse, annotation = "",            pvalueCutoff = 0.1, testDirection = "over") >output <- summary(hgKEGG_Over) I can get enriched geneSymbol as below. my question is how to correspond these geneSymbol to the entries (enclosed by square) in KEGG pathway figure? >overlap_EGs <- geneCluster[geneCluster %in% unlist(mget(output$KEGGID[1], revmap(org.Hs.egPATH),ifnotfound=NA))] >overlap_symbols <- mget(overlap_EGs, org.Hs.egSYMBOL) thanks Yu [[alternative HTML version deleted]]
annotation gostats • 359 views
ADD COMMENTlink written 8.8 years ago by Yuan Jian250
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 326 users visited in the last hour