Hi there! Attached to this mail you'll find a patch that adds a "sortBam" function to Rsamtools, which provides the functionality of to the "samtools sort" tool. The patch was made using R-devel version 2.12.0 (2010-07-21 r52595) against the Bioconductor SVN trunk rev. 48321 (checked out 2010-07-22). I'd appreciate it if the patch could be integrated into the next Rsamtools release (provided it meets the necessary quality criteria, that is ;) ). Also, any criticism of any kind is welcome as well. :) Cheers Thomas

Thomas Unterthiner <thomas.unterthiner at="" students.jku.at=""> writes: > Hi there! > Attached to this mail you'll find a patch that adds a "sortBam" > function to Rsamtools, which provides the functionality of to the > "samtools sort" tool. > > The patch was made using R-devel version 2.12.0 (2010-07-21 r52595) > against the Bioconductor SVN trunk rev. 48321 (checked out > 2010-07-22). I'd appreciate it if the patch could be integrated into > the next Rsamtools release (provided it meets the necessary quality > criteria, that is ;) ). Also, any criticism of any kind is welcome as > well. :) Hi Thomas -- attachments get stripped from the mailing list; feel free to forward to me directly. Looking forward to your contribution! Martin > Cheers > > Thomas > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793