Hi Fabian, Because you asked about them, I exposed some more of the KEGG SOAP api and added 6 new functions to the KEGGSOAP package to help expose the KEGG ko numbers etc.. I think that these will probably help with your problem but I cannot be completely sure since you didn't say exactly what you wanted to do. To use them you will need the devel version of KEGGSOAP which should update for biocLite() in the next 24 hours or so. Marc On 08/12/2010 03:58 AM, Vincent Carey wrote: > The keggorthology package supplies some of the relevant material. See the > vignette for indications of its scope; post back to the list if there are > points that are unclear. KEGG.db will supply additional resources. The > direct association you seek may require some programming. Remember that the > specific pathway EC numbers are organism-specific, so "hsa" prefix may need > to be added to certain non-specific tokens, if the application is for Homo > sapiens, for example. > > On Thu, Aug 12, 2010 at 6:38 AM, Fabian Grammes <fabian.grammes at="" nofima.no="">wrote: > > >> Dear List >> >> Is there currently any package (or way) allowing to associate KEGG K >> numbers (K02995) to pathways (ko03011) or ec. numbers? >> >> Thanks, Fabian ! >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >