BioConductor and caBIG
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@mcoyneboninccom-3525
Last seen 10.1 years ago
BODY { font-family:Arial, Helvetica, sans-serif;font- size:12px; } Hi All, I'm not quite sure if my question is appropriate for this forum; if not, please direct me to the correct forum. I understand that BioConductor establishes itself as an analytical service on the caGRID (of caBIG program of NCI). I wonder what is the status of the project and furthermore, I would like to be able to use the bioConductor analytical services, where would I get documentation and any additional software that I need to download and where would I obtain the software. (I'm familiar with caGRID, caCORE, and have experience in getting data service up and running on the caGRID, not have not work with it Analytical Service at all.) My Coyne mcoyne@boninc.com (cel): 301-399-6351 [[alternative HTML version deleted]]
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@martin-morgan-1513
Last seen 10 weeks ago
United States
On 08/16/2010 09:50 AM, mcoyne at boninc.com wrote: > > > BODY { font-family:Arial, Helvetica, sans-serif;font- size:12px; } > Hi All, > > I'm not quite sure if my question is appropriate for this forum; if > not, please direct me to the correct forum. I understand that > BioConductor establishes itself as an analytical service on the caGRID > (of caBIG program of NCI). I wonder what is the status of the > project and furthermore, I would like to be able to use the > bioConductor analytical services, where would I get documentation and > any additional software that I need to download and where would I > obtain the software. > (I'm familiar with caGRID, caCORE, and have experience in getting > data service up and running on the caGRID, not have not work with it > Analytical Service at all.) > My Coyne Hi -- A small number of Bioconductor work flows have been established as caGrid analytic services; these are discoverable on the caGrid portal, http://cagrid-portal.nci.nih.gov as those services that are hosted at the Fred Hutchinson Cancer Research Center here in Seattle. Documentation is available at https://gforge.nci.nih.gov/docman/?group_id=175 under '02 Bioconductor CaGrid Services'. The functionality provided by the services is documented in the Service Documentation archive; the Installation Guide provides instruction on establishing your own instances. The RWebServices package http://bioconductor.org/packages/release/bioc/html/RWebServices.html has a vignette on enabling web services on additional packages, including how these are combined with the caGrid introduce infrastructure, so that it is not impossible to create custom caGrid services. The code for the services is in gforge, https://gforge.nci.nih.gov/scm/?group_id=175 Please let me know if you'd like further assistance. Martin > mcoyne at boninc.com > (cel): 301-399-6351 > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793
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