Hi Daniel, First to thank all Bioc people for making/supporting/advising great libraries. I also use Xps and I remember Christian (the author) said to me once that he is aiming to add/implement affyplm . In the mean time I used Aroma package (which is out of BioC) since they tweaked affyplm and this R tool can also work on "standard" desktop PC. The probeLm residual figures showed ( for our assay with Human Exon 1.0 ST Array), some chips with hybridization artifacts... so we informed the company doing the hybridization and they were willing to re-hybridize the chips. Best, Branko

Dear Branko, Since I develop xps completely in my spare free time some tings take longer as expected. I have already implemented initial versions of NUSE plots and RLE plots, which are already available in xps, and I am still aiming to implement residual-images and affyplm, but this turns out to be not as simple as I thought. Best regards Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l: cstrato at aon.at _._._._._._._._._._._._._._._._._._ On 9/10/10 3:18 PM, B.Misovic at lumc.nl wrote: > > Hi Daniel, > > First to thank all Bioc people for making/supporting/advising great libraries. > > I also use Xps and I remember Christian (the author) said to me once that he is aiming to add/implement affyplm . In the mean time I used Aroma package (which is out of BioC) since they tweaked affyplm and this R tool can also work on "standard" desktop PC. > > The probeLm residual figures showed ( for our assay with Human Exon 1.0 ST Array), some chips with hybridization artifacts... so we informed the company doing the hybridization and they were willing to re-hybridize the chips. > > Best, > Branko > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >