Dear bioconductor experts, I am developing a package to submit to bioconductor. Right now, a gene-set sample data is saved as a data frame. Each row contains a probe set and its corresponding gene-set name ( mutiple probe -set may map to a gene-set name) . Is this type of data format OK to be submitted to bioconductor? Or I have to make it to GeneCollectionSet class? ( If so, I have to change a lot of my R functions). Your resonse is highly appreciated! Lani [[alternative HTML version deleted]]

On 10/11/2010 01:10 PM, lan gao wrote: > Dear bioconductor experts, > > I am developing a package to submit to bioconductor. Right now, a gene-set > sample data is saved as a data frame. Each row contains a probe set > and its corresponding gene-set name ( mutiple probe -set may map to a > gene-set name) . > > Is this type of data format OK to be submitted to bioconductor? Or I have to > make it to GeneCollectionSet class? ( If so, I have to change a lot of my R > functions). Lani -- Packages should use established S4 classes where available, so yes, you should GSEABase::GeneSetCollection. This question is appropriate for the Bioc-devel mailing list. Martin > > Your resonse is highly appreciated! > > > Lani > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793