Hi, GenomicFeatures/R/transcriptBy.R, lines 296 and 337: 'txdb' should be 'x'. So: seqinfo <- getTranscriptDbSeqinfo(txdb) should be seqinfo <- getTranscriptDbSeqinfo(x) Thanks, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact

On 10/11/2010 05:03 PM, Steve Lianoglou wrote: > Hi, > > GenomicFeatures/R/transcriptBy.R, lines 296 and 337: 'txdb' should be 'x'. So: > > seqinfo <- getTranscriptDbSeqinfo(txdb) > > should be > > seqinfo <- getTranscriptDbSeqinfo(x) Thanks, fixed in r50111 / 1.1.16 Martin > > Thanks, > -steve > -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793