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Lakshmi Kastury
▴
40
@lakshmi-kastury-4300
Last seen 10.3 years ago
Hi - I am new to Bioconductor.
I have generated RMA expression data in order to analyze given probe
data in the form of .CEL files.
I am now at the point of performing a pairwise analysis, as written
below:
# Pairwise function -
# Uses the output from RMA (x.rma), and the array parameter from
covdesc.txt:
results <- pairwise.comparison(x.rma, "Control", c("Y", "N"),
raw.data)
#Pairwise filter -
significant <- pairwise.filter(results, fc=log2(1.5),
min.present.no=10, tt=0.01, present.by.group=F)
**I need assistance in exporting the top 25 probe values with lowest
p-value to a .CSV file. I am not familiar with the syntax to export in
this manner.
Thanks,
Lakshmi
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