Error while ChIPpeakAnno installation
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@prashantha-hebbar-3526
Last seen 23 months ago
Dear Friends, I found an error during ChIPpeakAnno installation. Following is that error message. > biocLite("ChIPpeakAnno") Using R version 2.9.2, biocinstall version 2.4.13. Installing Bioconductor version 2.4 packages: [1] "ChIPpeakAnno" Please wait... Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : argument 'lib' is missing: using '/home/kiradi/R/i486-pc-linux-gnu-library/2.9' Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘ChIPpeakAnno’ is not available Required dependencies such as BiomaRt, IRanges, Limma etc have been installed, properly. So, can you please suggest what could be the solution to make it up and run? Thanking you in anticipation. Regards, Prashantha [[alternative HTML version deleted]]
limma biomaRt IRanges ChIPpeakAnno limma biomaRt IRanges ChIPpeakAnno • 718 views
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Julie Zhu ★ 4.3k
@julie-zhu-3596
Last seen 3 months ago
United States
Prashantha, You are using old version of R and bioconductor. Could you please update to R 2.11 and Bioc 2.6, or R 2.11 and Bioc 2.7? Please let me know if you still have problem. Thanks! Best regards, Julie On 10/21/10 3:37 AM, "Prashantha Hebbar" <prashantha.hebbar at="" yahoo.com=""> wrote: > Dear Friends, > I found an error during ChIPpeakAnno installation. Following is that error > message. > >> biocLite("ChIPpeakAnno") > Using R version 2.9.2, biocinstall version 2.4.13. > Installing Bioconductor version 2.4 packages: > [1] "ChIPpeakAnno" > Please wait... > > Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = > dependencies, : > argument 'lib' is missing: using > '/home/kiradi/R/i486-pc-linux-gnu-library/2.9' > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ?ChIPpeakAnno? is not available > > Required dependencies such as BiomaRt, IRanges, Limma etc have been installed, > properly. So, can you please suggest what could be the solution to make it up > and run? > Thanking you in anticipation. > Regards, > Prashantha > > > > [[alternative HTML version deleted]] >
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