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Question: Error while ChIPpeakAnno installation
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gravatar for Prashantha Hebbar
7.0 years ago by
Prashantha Hebbar • 260
Prashantha Hebbar • 260 wrote:
Dear Friends, I found an error during ChIPpeakAnno installation. Following is that error message. > biocLite("ChIPpeakAnno") Using R version 2.9.2, biocinstall version 2.4.13. Installing Bioconductor version 2.4 packages: [1] "ChIPpeakAnno" Please wait... Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : argument 'lib' is missing: using '/home/kiradi/R/i486-pc-linux-gnu-library/2.9' Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘ChIPpeakAnno’ is not available Required dependencies such as BiomaRt, IRanges, Limma etc have been installed, properly. So, can you please suggest what could be the solution to make it up and run? Thanking you in anticipation. Regards, Prashantha [[alternative HTML version deleted]]
limma biomart iranges chippeakanno
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modified 7.0 years ago by Julie Zhu • 3.7k • written 7.0 years ago by Prashantha Hebbar • 260
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gravatar for Julie Zhu
7.0 years ago by
Julie Zhu • 3.7k
United States
Julie Zhu • 3.7k wrote:
Prashantha, You are using old version of R and bioconductor. Could you please update to R 2.11 and Bioc 2.6, or R 2.11 and Bioc 2.7? Please let me know if you still have problem. Thanks! Best regards, Julie On 10/21/10 3:37 AM, "Prashantha Hebbar" <prashantha.hebbar at="" yahoo.com=""> wrote: > Dear Friends, > I found an error during ChIPpeakAnno installation. Following is that error > message. > >> biocLite("ChIPpeakAnno") > Using R version 2.9.2, biocinstall version 2.4.13. > Installing Bioconductor version 2.4 packages: > [1] "ChIPpeakAnno" > Please wait... > > Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = > dependencies, : > argument 'lib' is missing: using > '/home/kiradi/R/i486-pc-linux-gnu-library/2.9' > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ?ChIPpeakAnno? is not available > > Required dependencies such as BiomaRt, IRanges, Limma etc have been installed, > properly. So, can you please suggest what could be the solution to make it up > and run? > Thanking you in anticipation. > Regards, > Prashantha > > > > [[alternative HTML version deleted]] >
ADD COMMENT • link written 7.0 years ago by Julie Zhu • 3.7k
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