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koechert, karl
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30
@koechert-karl-3751
Last seen 10.3 years ago
Hey,
I've been using beedarray quite often, but now with the new version
I'm running in some error when trying to reading in the bead level
data with readIllumina(). Does anyone know why this is happening or
had a similar experience? What is meant with file 'NA/NA'?
Thanks for any help!
Karl
see below:
> bld=readIllumina(arrayNames=targets$Array, textType=".txt",
backgroundMethod="none", annoPkg="Humanv4", useImages=FALSE)
Fehler in file(file, "rt") : kann Verbindung nicht öffnen //error:
can't open connection
Zusätzlich: Warnmeldung: //additional: error
In file(file, "rt") :
kann Datei 'NA/NA' nicht öffnen: No such file or directory // can't
open file 'NA/NA'
> bld=readIllumina(useImages = FALSE, illuminaAnnotation = "Humanv4")
Fehler in file(file, "rt") : kann Verbindung nicht öffnen //error:
can't open connection
Zusätzlich: Warnmeldung:
In file(file, "rt") ://additional: error
kann Datei 'NA/NA' nicht öffnen: No such file or directory // can't
open file 'NA/NA'
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] illuminaHumanv4BeadID.db_1.8.0 org.Hs.eg.db_2.4.6
RSQLite_0.9-2
[4] DBI_0.2-5 AnnotationDbi_1.12.0
limma_3.6.6
[7] beadarray_2.0.1 Biobase_2.10.0
loaded via a namespace (and not attached):
[1] tools_2.12.0
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