seeking advice on analyzing CGH data
Entering edit mode
Paul Shannon ★ 1.1k
Last seen 8.0 years ago
I wish to reduce a 243440-line array CGH data set, in a single GEO file (GSE20574), from an Agilent 244A aCGH array. My primary goal is to identify deleted, normal, and gain/amplification regions on all chromosomes, and then to identify genes annotated to these regions which may have been affected. Never having done an analysis like this before, I'd be grateful for advice. Looking at the bioc package repository, I see a number of CGH-related packages, but I am not quite sure which to use. What do I read? Where do I start? Thanks. - Paul
aCGH CGH aCGH aCGH CGH aCGH • 1.3k views

Login before adding your answer.

Traffic: 509 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6