SPIA package with updated KEGG pathways
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@bhaskar-dutta-4121
Last seen 9.6 years ago
Hello, KEGG pathways were recently updated. How can I use the SPIA package with the updated KEGG pathways? thanks Bhaskar
Pathways SPIA Pathways SPIA • 1.2k views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 7.7 years ago
United States
Hi Bhaskar, How recently are we talking about? There was a release of bioconductor just a couple months ago, so all the standard annotation packages for the new release have the most recent KEGG pathways from then. But if you need something even more bleeding edge than that, then you should consider using a package that is tied to a web resource like biomaRt. Marc On 12/08/2010 09:22 AM, Bhaskar Dutta wrote: > Hello, > > KEGG pathways were recently updated. How can I use the SPIA package > with the updated KEGG pathways? > > thanks > Bhaskar > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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