booklet on using R for biomedical statistics
3
0
Entering edit mode
@coghlan-avril-3810
Last seen 10.2 years ago
Dear all, I've written a small booklet on using R for biomedical statistics (mostly focussed on cohort and case-control studies), available here under a Creative Commons Attribution 3.0 License : "A Little Book of R for Biomedical Statistics" http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ I would be grateful for feedback and comments. Kind Regards, Avril Avril Coghlan University College Cork, Ireland [[alternative HTML version deleted]]
• 2.0k views
ADD COMMENT •
0
Entering edit mode
@richard-friedman-513
Last seen 10.2 years ago
Avril. My first comment (as an unreconstructed paper-reader) is that a pdf version would be helpful. Thanks and best wishes, Rich On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > Dear all, > > > > > > I've written a small booklet on using R for biomedical statistics > (mostly focussed on cohort and case-control studies), available here > under a Creative Commons Attribution 3.0 License : > > > > > "A Little Book of R for Biomedical Statistics" > > > http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ > > > > > > I would be grateful for feedback and comments. > > > Kind Regards, > > > Avril > > > > > > Avril Coghlan > University College Cork, Ireland > > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENT •
0
Entering edit mode
Please take discussion of this resource off this list. This has nothing to do with Bioconductor. On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman <friedman at="" cancercenter.columbia.edu=""> wrote: > Avril. > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > version > would be helpful. > > Thanks and best wishes, > Rich > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > >> Dear all, >> >> >> >> >> >> I've written a small booklet on using R for biomedical statistics >> (mostly focussed on cohort and case-control studies), available here >> under a Creative Commons Attribution 3.0 License : >> >> >> >> >> "A Little Book of R for Biomedical Statistics" >> >> >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >> >> >> >> >> >> I would be grateful for feedback and comments. >> >> >> Kind Regards, >> >> >> Avril >> >> >> >> >> >> Avril Coghlan >> University College Cork, Ireland >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLY •
0
Entering edit mode
Dear Vincent, Sorry about that.. I had thought it could be of interest to people on this list. Regards, Avril -----Original Message----- From: Vincent Carey [mailto:stvjc@channing.harvard.edu] Sent: 13 December 2010 15:06 To: Richard Friedman Cc: Coghlan, Avril; bioconductor at r-project.org Subject: Re: [BioC] booklet on using R for biomedical statistics Please take discussion of this resource off this list. This has nothing to do with Bioconductor. On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman <friedman at="" cancercenter.columbia.edu=""> wrote: > Avril. > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > version > would be helpful. > > Thanks and best wishes, > Rich > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > >> Dear all, >> >> >> >> >> >> I've written a small booklet on using R for biomedical statistics >> (mostly focussed on cohort and case-control studies), available here >> under a Creative Commons Attribution 3.0 License : >> >> >> >> >> "A Little Book of R for Biomedical Statistics" >> >> >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >> >> >> >> >> >> I would be grateful for feedback and comments. >> >> >> Kind Regards, >> >> >> Avril >> >> >> >> >> >> Avril Coghlan >> University College Cork, Ireland >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLY •
0
Entering edit mode
For what it's worth, I found it quite interesting. On Mon, Dec 13, 2010 at 03:36:52PM -0000, Coghlan, Avril wrote: > Dear Vincent, > > Sorry about that.. I had thought it could be of interest to people on this list. > > Regards, > Avril > > -----Original Message----- > From: Vincent Carey [mailto:stvjc at channing.harvard.edu] > Sent: 13 December 2010 15:06 > To: Richard Friedman > Cc: Coghlan, Avril; bioconductor at r-project.org > Subject: Re: [BioC] booklet on using R for biomedical statistics > > Please take discussion of this resource off this list. This has > nothing to do with Bioconductor. > > On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman > <friedman at="" cancercenter.columbia.edu=""> wrote: > > Avril. > > > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > > version > > would be helpful. > > > > Thanks and best wishes, > > Rich > > > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > > > >> Dear all, > >> > >> > >> > >> > >> > >> I've written a small booklet on using R for biomedical statistics > >> (mostly focussed on cohort and case-control studies), available here > >> under a Creative Commons Attribution 3.0 License : > >> > >> > >> > >> > >> "A Little Book of R for Biomedical Statistics" > >> > >> > >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ > >> > >> > >> > >> > >> > >> I would be grateful for feedback and comments. > >> > >> > >> Kind Regards, > >> > >> > >> Avril > >> > >> > >> > >> > >> > >> Avril Coghlan > >> University College Cork, Ireland > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> ? ? ? ?[[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Stijn van Dongen >8< -o) O< forename pronunciation: [Stan] EMBL-EBI /\\ Tel: +44-(0)1223-492675 Hinxton, Cambridge, CB10 1SD, UK _\_/ http://micans.org/stijn
ADD REPLY •
0
Entering edit mode
I also found it very interesting. Thanks for making it available. cheers, Keith Stijn van Dongen wrote: > For what it's worth, I found it quite interesting. > > On Mon, Dec 13, 2010 at 03:36:52PM -0000, Coghlan, Avril wrote: > >> Dear Vincent, >> >> Sorry about that.. I had thought it could be of interest to people on this list. >> >> Regards, >> Avril >> >> -----Original Message----- >> From: Vincent Carey [mailto:stvjc at channing.harvard.edu] >> Sent: 13 December 2010 15:06 >> To: Richard Friedman >> Cc: Coghlan, Avril; bioconductor at r-project.org >> Subject: Re: [BioC] booklet on using R for biomedical statistics >> >> Please take discussion of this resource off this list. This has >> nothing to do with Bioconductor. >> >> On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman >> <friedman at="" cancercenter.columbia.edu=""> wrote: >> >>> Avril. >>> >>> My first comment (as an unreconstructed paper-reader) is that a pdf >>> version >>> would be helpful. >>> >>> Thanks and best wishes, >>> Rich >>> >>> On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: >>> >>> >>>> Dear all, >>>> >>>> >>>> >>>> >>>> >>>> I've written a small booklet on using R for biomedical statistics >>>> (mostly focussed on cohort and case-control studies), available here >>>> under a Creative Commons Attribution 3.0 License : >>>> >>>> >>>> >>>> >>>> "A Little Book of R for Biomedical Statistics" >>>> >>>> >>>> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >>>> >>>> >>>> >>>> >>>> >>>> I would be grateful for feedback and comments. >>>> >>>> >>>> Kind Regards, >>>> >>>> >>>> Avril >>>> >>>> >>>> >>>> >>>> >>>> Avril Coghlan >>>> University College Cork, Ireland >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >>> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:4}}
ADD REPLY •
0
Entering edit mode
Dear Avril: Thanks for creating this resource for beginners in R and biomedical statistics (I consider myself one). I have always benefited from resources kindly made freely available by the authors (e.g., www.r-project.org and www.bioconductor.org). However, please understand that this mailing list has a specific purpose. Your posting does not comply with "This mailing list is for questions and answers about using Bioconductor as well as announcements relevant to the Bioconductor project and community. " -- from https://stat.ethz.ch/mailman/listinfo/bioconductor (bioconductor info page). Your book is (or could be) interesting to some (many) members here, but it is not Bioconductor, and is best discussed elsewhere. Regards, Saroj --- On Mon, 13/12/10, Coghlan, Avril <a.coghlan at="" ucc.ie=""> wrote: > From: Coghlan, Avril <a.coghlan at="" ucc.ie=""> > Subject: Re: [BioC] booklet on using R for biomedical statistics > To: "Vincent Carey" <stvjc at="" channing.harvard.edu=""> > Cc: bioconductor at r-project.org > Date: Monday, 13 December, 2010, 9:06 PM > Dear Vincent, > > Sorry about that.. I had thought it could be of interest to > people on this list. > > Regards, > Avril > > -----Original Message----- > From: Vincent Carey [mailto:stvjc at channing.harvard.edu] > > Sent: 13 December 2010 15:06 > To: Richard Friedman > Cc: Coghlan, Avril; bioconductor at r-project.org > Subject: Re: [BioC] booklet on using R for biomedical > statistics > > Please take discussion of this resource off this > list.? This has > nothing to do with Bioconductor. > > On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman > <friedman at="" cancercenter.columbia.edu=""> > wrote: > > Avril. > > > > ? ? ? ?My first comment (as an unreconstructed > paper-reader) is that a pdf > > version > > would be helpful. > > > > Thanks and best wishes, > > Rich > > > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > > > >> Dear all, > >> > >> > >> > >> > >> > >> I've written a small booklet on using R for > biomedical statistics > >> (mostly focussed on cohort and case-control > studies), available here > >> under a Creative Commons Attribution 3.0 License > : > >> > >> > >> > >> > >> "A Little Book of R for Biomedical Statistics" > >> > >> > >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ > >> > >> > >> > >> > >> > >> I would be grateful for feedback and comments. > >> > >> > >> Kind Regards, > >> > >> > >> Avril > >> > >> > >> > >> > >> > >> Avril Coghlan > >> University College Cork, Ireland > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> ? ? ? ?[[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLY •
0
Entering edit mode
I am a bit puzzled as to this discussion. After all the person posting the booklet would not have had a discussion here except for people complaining about it as inappropriate. It is a resource, there are newbies, it is useful, does it hurt anyone? Yet there are no complaints about a post that I would coniser "spam" calling for posters at a qPCR symposium. It is not a Bioconductor symposium per se. I think the idea of lets all chill out it is Christmas might be appropriate. Andy
ADD REPLY •
0
Entering edit mode
rinku saha ▴ 30
@rinku-saha-295
Last seen 10.2 years ago
Hi Avril I think its very useful for newbees like me.Thank you for sharing it. Kind Regards Rinku > Date: Mon, 13 Dec 2010 14:37:31 +0000 > From: A.Coghlan@ucc.ie > To: bioconductor@r-project.org > Subject: [BioC] booklet on using R for biomedical statistics > > Dear all, > > > > > > I've written a small booklet on using R for biomedical statistics > (mostly focussed on cohort and case-control studies), available here > under a Creative Commons Attribution 3.0 License : > > > > > "A Little Book of R for Biomedical Statistics" > > > http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ > > > > > > I would be grateful for feedback and comments. > > > Kind Regards, > > > Avril > > > > > > Avril Coghlan > University College Cork, Ireland > > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD COMMENT •
0
Entering edit mode
Jianping Jin ▴ 890
@jianping-jin-1212
Last seen 10.2 years ago
Hi Avril, A great work. Wondering is there any chapter for survive study? JP- -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Coghlan, Avril Sent: Monday, December 13, 2010 9:38 AM To: bioconductor at r-project.org Subject: [BioC] booklet on using R for biomedical statistics Dear all, I've written a small booklet on using R for biomedical statistics (mostly focussed on cohort and case-control studies), available here under a Creative Commons Attribution 3.0 License : "A Little Book of R for Biomedical Statistics" http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ I would be grateful for feedback and comments. Kind Regards, Avril Avril Coghlan University College Cork, Ireland [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENT •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 840 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6