booklet on using R for biomedical statistics
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@coghlan-avril-3810
Last seen 10.2 years ago
Dear all, I've written a small booklet on using R for biomedical statistics (mostly focussed on cohort and case-control studies), available here under a Creative Commons Attribution 3.0 License : "A Little Book of R for Biomedical Statistics" http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ I would be grateful for feedback and comments. Kind Regards, Avril Avril Coghlan University College Cork, Ireland [[alternative HTML version deleted]]
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@richard-friedman-513
Last seen 10.2 years ago
Avril. My first comment (as an unreconstructed paper-reader) is that a pdf version would be helpful. Thanks and best wishes, Rich On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > Dear all, > > > > > > I've written a small booklet on using R for biomedical statistics > (mostly focussed on cohort and case-control studies), available here > under a Creative Commons Attribution 3.0 License : > > > > > "A Little Book of R for Biomedical Statistics" > > > http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ > > > > > > I would be grateful for feedback and comments. > > > Kind Regards, > > > Avril > > > > > > Avril Coghlan > University College Cork, Ireland > > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Please take discussion of this resource off this list. This has nothing to do with Bioconductor. On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman <friedman at="" cancercenter.columbia.edu=""> wrote: > Avril. > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > version > would be helpful. > > Thanks and best wishes, > Rich > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > >> Dear all, >> >> >> >> >> >> I've written a small booklet on using R for biomedical statistics >> (mostly focussed on cohort and case-control studies), available here >> under a Creative Commons Attribution 3.0 License : >> >> >> >> >> "A Little Book of R for Biomedical Statistics" >> >> >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >> >> >> >> >> >> I would be grateful for feedback and comments. >> >> >> Kind Regards, >> >> >> Avril >> >> >> >> >> >> Avril Coghlan >> University College Cork, Ireland >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Dear Vincent, Sorry about that.. I had thought it could be of interest to people on this list. Regards, Avril -----Original Message----- From: Vincent Carey [mailto:stvjc@channing.harvard.edu] Sent: 13 December 2010 15:06 To: Richard Friedman Cc: Coghlan, Avril; bioconductor at r-project.org Subject: Re: [BioC] booklet on using R for biomedical statistics Please take discussion of this resource off this list. This has nothing to do with Bioconductor. On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman <friedman at="" cancercenter.columbia.edu=""> wrote: > Avril. > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > version > would be helpful. > > Thanks and best wishes, > Rich > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > >> Dear all, >> >> >> >> >> >> I've written a small booklet on using R for biomedical statistics >> (mostly focussed on cohort and case-control studies), available here >> under a Creative Commons Attribution 3.0 License : >> >> >> >> >> "A Little Book of R for Biomedical Statistics" >> >> >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >> >> >> >> >> >> I would be grateful for feedback and comments. >> >> >> Kind Regards, >> >> >> Avril >> >> >> >> >> >> Avril Coghlan >> University College Cork, Ireland >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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For what it's worth, I found it quite interesting. On Mon, Dec 13, 2010 at 03:36:52PM -0000, Coghlan, Avril wrote: > Dear Vincent, > > Sorry about that.. I had thought it could be of interest to people on this list. > > Regards, > Avril > > -----Original Message----- > From: Vincent Carey [mailto:stvjc at channing.harvard.edu] > Sent: 13 December 2010 15:06 > To: Richard Friedman > Cc: Coghlan, Avril; bioconductor at r-project.org > Subject: Re: [BioC] booklet on using R for biomedical statistics > > Please take discussion of this resource off this list. This has > nothing to do with Bioconductor. > > On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman > <friedman at="" cancercenter.columbia.edu=""> wrote: > > Avril. > > > > ? ? ? ?My first comment (as an unreconstructed paper-reader) is that a pdf > > version > > would be helpful. > > > > Thanks and best wishes, > > Rich > > > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > > > >> Dear all, > >> > >> > >> > >> > >> > >> I've written a small booklet on using R for biomedical statistics > >> (mostly focussed on cohort and case-control studies), available here > >> under a Creative Commons Attribution 3.0 License : > >> > >> > >> > >> > >> "A Little Book of R for Biomedical Statistics" > >> > >> > >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ > >> > >> > >> > >> > >> > >> I would be grateful for feedback and comments. > >> > >> > >> Kind Regards, > >> > >> > >> Avril > >> > >> > >> > >> > >> > >> Avril Coghlan > >> University College Cork, Ireland > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> ? ? ? ?[[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Stijn van Dongen >8< -o) O< forename pronunciation: [Stan] EMBL-EBI /\\ Tel: +44-(0)1223-492675 Hinxton, Cambridge, CB10 1SD, UK _\_/ http://micans.org/stijn
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I also found it very interesting. Thanks for making it available. cheers, Keith Stijn van Dongen wrote: > For what it's worth, I found it quite interesting. > > On Mon, Dec 13, 2010 at 03:36:52PM -0000, Coghlan, Avril wrote: > >> Dear Vincent, >> >> Sorry about that.. I had thought it could be of interest to people on this list. >> >> Regards, >> Avril >> >> -----Original Message----- >> From: Vincent Carey [mailto:stvjc at channing.harvard.edu] >> Sent: 13 December 2010 15:06 >> To: Richard Friedman >> Cc: Coghlan, Avril; bioconductor at r-project.org >> Subject: Re: [BioC] booklet on using R for biomedical statistics >> >> Please take discussion of this resource off this list. This has >> nothing to do with Bioconductor. >> >> On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman >> <friedman at="" cancercenter.columbia.edu=""> wrote: >> >>> Avril. >>> >>> My first comment (as an unreconstructed paper-reader) is that a pdf >>> version >>> would be helpful. >>> >>> Thanks and best wishes, >>> Rich >>> >>> On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: >>> >>> >>>> Dear all, >>>> >>>> >>>> >>>> >>>> >>>> I've written a small booklet on using R for biomedical statistics >>>> (mostly focussed on cohort and case-control studies), available here >>>> under a Creative Commons Attribution 3.0 License : >>>> >>>> >>>> >>>> >>>> "A Little Book of R for Biomedical Statistics" >>>> >>>> >>>> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ >>>> >>>> >>>> >>>> >>>> >>>> I would be grateful for feedback and comments. >>>> >>>> >>>> Kind Regards, >>>> >>>> >>>> Avril >>>> >>>> >>>> >>>> >>>> >>>> Avril Coghlan >>>> University College Cork, Ireland >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >>> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:4}}
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Dear Avril: Thanks for creating this resource for beginners in R and biomedical statistics (I consider myself one). I have always benefited from resources kindly made freely available by the authors (e.g., www.r-project.org and www.bioconductor.org). However, please understand that this mailing list has a specific purpose. Your posting does not comply with "This mailing list is for questions and answers about using Bioconductor as well as announcements relevant to the Bioconductor project and community. " -- from https://stat.ethz.ch/mailman/listinfo/bioconductor (bioconductor info page). Your book is (or could be) interesting to some (many) members here, but it is not Bioconductor, and is best discussed elsewhere. Regards, Saroj --- On Mon, 13/12/10, Coghlan, Avril <a.coghlan at="" ucc.ie=""> wrote: > From: Coghlan, Avril <a.coghlan at="" ucc.ie=""> > Subject: Re: [BioC] booklet on using R for biomedical statistics > To: "Vincent Carey" <stvjc at="" channing.harvard.edu=""> > Cc: bioconductor at r-project.org > Date: Monday, 13 December, 2010, 9:06 PM > Dear Vincent, > > Sorry about that.. I had thought it could be of interest to > people on this list. > > Regards, > Avril > > -----Original Message----- > From: Vincent Carey [mailto:stvjc at channing.harvard.edu] > > Sent: 13 December 2010 15:06 > To: Richard Friedman > Cc: Coghlan, Avril; bioconductor at r-project.org > Subject: Re: [BioC] booklet on using R for biomedical > statistics > > Please take discussion of this resource off this > list.? This has > nothing to do with Bioconductor. > > On Mon, Dec 13, 2010 at 9:47 AM, Richard Friedman > <friedman at="" cancercenter.columbia.edu=""> > wrote: > > Avril. > > > > ? ? ? ?My first comment (as an unreconstructed > paper-reader) is that a pdf > > version > > would be helpful. > > > > Thanks and best wishes, > > Rich > > > > On Dec 13, 2010, at 9:37 AM, Coghlan, Avril wrote: > > > >> Dear all, > >> > >> > >> > >> > >> > >> I've written a small booklet on using R for > biomedical statistics > >> (mostly focussed on cohort and case-control > studies), available here > >> under a Creative Commons Attribution 3.0 License > : > >> > >> > >> > >> > >> "A Little Book of R for Biomedical Statistics" > >> > >> > >> http://a-little-book-of-r-for-biomedical- statistics.readthedocs.org/ > >> > >> > >> > >> > >> > >> I would be grateful for feedback and comments. > >> > >> > >> Kind Regards, > >> > >> > >> Avril > >> > >> > >> > >> > >> > >> Avril Coghlan > >> University College Cork, Ireland > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> > >> ? ? ? ?[[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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I am a bit puzzled as to this discussion. After all the person posting the booklet would not have had a discussion here except for people complaining about it as inappropriate. It is a resource, there are newbies, it is useful, does it hurt anyone? Yet there are no complaints about a post that I would coniser "spam" calling for posters at a qPCR symposium. It is not a Bioconductor symposium per se. I think the idea of lets all chill out it is Christmas might be appropriate. Andy
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rinku saha ▴ 30
@rinku-saha-295
Last seen 10.2 years ago
Hi Avril I think its very useful for newbees like me.Thank you for sharing it. Kind Regards Rinku > Date: Mon, 13 Dec 2010 14:37:31 +0000 > From: A.Coghlan@ucc.ie > To: bioconductor@r-project.org > Subject: [BioC] booklet on using R for biomedical statistics > > Dear all, > > > > > > I've written a small booklet on using R for biomedical statistics > (mostly focussed on cohort and case-control studies), available here > under a Creative Commons Attribution 3.0 License : > > > > > "A Little Book of R for Biomedical Statistics" > > > http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ > > > > > > I would be grateful for feedback and comments. > > > Kind Regards, > > > Avril > > > > > > Avril Coghlan > University College Cork, Ireland > > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
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Jianping Jin ▴ 890
@jianping-jin-1212
Last seen 10.2 years ago
Hi Avril, A great work. Wondering is there any chapter for survive study? JP- -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Coghlan, Avril Sent: Monday, December 13, 2010 9:38 AM To: bioconductor at r-project.org Subject: [BioC] booklet on using R for biomedical statistics Dear all, I've written a small booklet on using R for biomedical statistics (mostly focussed on cohort and case-control studies), available here under a Creative Commons Attribution 3.0 License : "A Little Book of R for Biomedical Statistics" http://a-little-book-of-r-for-biomedical-statistics.readthedocs.org/ I would be grateful for feedback and comments. Kind Regards, Avril Avril Coghlan University College Cork, Ireland [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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