Question: Is there a place to download GenomicFeatures' sqlite from ensembl.
7.9 years ago by
Fabrice Tourre • 970
Fabrice Tourre • 970 wrote:
Dear all, I am trying to make TranscriptDb Object. First I used makeTranscriptDbFromUCSC, it is no problem. The command is this: library("GenomicFeatures") hg19KG <- makeTranscriptDbFromUCSC(genome = "hg19", tablename = "knownGene") But I also want to look the anotation from ensembl, some isoform defined different in ucsc and ensembl. I run this comand, it took two days and not finished. library("GenomicFeatures") hgensembl<- makeTranscriptDbFromBiomart(biomart="ensembl",dataset="hsa piens_gene_ensembl") So I think is there a place to download the sqlite file directtly by http or ftp? Thanks.
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