Hi, I need to install the mogene10stv1cdf package to analyze the mouse gene 1.0 ST array. I used the command specified on bioconductor page (source("http://www.bioconductor.org/biocLite.R"); biocLite("mogene10stv1cdf");), but I got the following error message: __________________________________________________________________ Running biocinstall version 2.3.14 with R version 2.8.0 Your version of R requires version 2.3 of Bioconductor. Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : argument 'lib' is missing: using '/usr/lib64/R/library' Warning message: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : Package mogene10stv1cdf is not available __________________________________________________________________ Here is the sessionInfo: > sessionInfo() R version 2.8.0 (2008-10-20) x86_64-redhat-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8 ;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C; LC_ADD RESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] splines tools stats graphics grDevices utils datasets [8] methods base other attached packages: [1] limma_2.16.5 simpleaffy_2.18.0 genefilter_1.22.0 [4] survival_2.35-8 geneplotter_1.20.0 annotate_1.20.1 [7] xtable_1.5-6 AnnotationDbi_1.4.3 lattice_0.17-15 [10] affyPLM_1.18.1 preprocessCore_1.4.0 gcrma_2.14.1 [13] matchprobes_1.14.1 affy_1.20.2 Biobase_2.2.2 loaded via a namespace (and not attached): [1] affyio_1.10.1 DBI_0.2-5 grid_2.8.0 KernSmooth_2.23-3 [5] RColorBrewer_1.0-2 RSQLite_0.8-3 Thanks a lot! Ming [[alternative HTML version deleted]]

Hi Ming, On 12/15/2010 1:42 PM, Ming Zheng wrote: > Hi, > > > > I need to install the mogene10stv1cdf package to analyze the mouse gene 1.0 > ST array. I used the command specified on bioconductor page > (source("http://www.bioconductor.org/biocLite.R"); > biocLite("mogene10stv1cdf");), but I got the following error message: > > __________________________________________________________________ > > Running biocinstall version 2.3.14 with R version 2.8.0 It's because you are living in 2008, whereas everybody else is in 2010 ;-D If you update to R-2.12.0, then this will work out for you. Best, Jim > > Your version of R requires version 2.3 of Bioconductor. > > Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = > dependencies, : > > argument 'lib' is missing: using '/usr/lib64/R/library' > > Warning message: > > In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, > : > > Package mogene10stv1cdf is not available > > __________________________________________________________________ > > > > Here is the sessionInfo: > >> sessionInfo() > > R version 2.8.0 (2008-10-20) > > x86_64-redhat-linux-gnu > > > > locale: > > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_ US.UTF-8 > ;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME= C;LC_ADD > RESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > > > attached base packages: > > [1] splines tools stats graphics grDevices utils datasets > > [8] methods base > > > > other attached packages: > > [1] limma_2.16.5 simpleaffy_2.18.0 genefilter_1.22.0 > > [4] survival_2.35-8 geneplotter_1.20.0 annotate_1.20.1 > > [7] xtable_1.5-6 AnnotationDbi_1.4.3 lattice_0.17-15 > > [10] affyPLM_1.18.1 preprocessCore_1.4.0 gcrma_2.14.1 > > [13] matchprobes_1.14.1 affy_1.20.2 Biobase_2.2.2 > > > > loaded via a namespace (and not attached): > > [1] affyio_1.10.1 DBI_0.2-5 grid_2.8.0 > KernSmooth_2.23-3 > > [5] RColorBrewer_1.0-2 RSQLite_0.8-3 > > > > Thanks a lot! > > > > Ming > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues