Hi Does anyone have codes for the following: 1) Read CEL files 2) normalization 3) dChip 4) multtest 5 finding Significant genes 6) hierarchical clustering 7) box plots 8)histograms and anything else that can be useful pevi [[alternative HTML version deleted]]

You can try to see this library of codes. http://proteogenomics.musc.edu/ma/arrayQuest.php?page=home&act=manage& process=Methods_Library_List Saurin --- On Fri, 12/17/10, Peevi Ijkl <ipeevi at="" yahoo.com=""> wrote: > From: Peevi Ijkl <ipeevi at="" yahoo.com=""> > Subject: [BioC] codes > To: bioconductor at stat.math.ethz.ch > Date: Friday, December 17, 2010, 2:39 PM > Hi > Does anyone have codes for the following: > 1) Read CEL files > 2) normalization > 3) dChip > 4) multtest > 5 finding Significant genes > 6) hierarchical clustering > 7) box plots > 8)histograms > and anything else that can be useful > > pevi > > > > ? ? ? > ??? [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >

Hi, On Fri, Dec 17, 2010 at 2:39 PM, Peevi Ijkl <ipeevi at="" yahoo.com=""> wrote: > Hi > Does anyone have codes for the following: > 1) Read CEL files > 2) normalization > 3) dChip > 4) multtest > 5 finding Significant genes > 6) hierarchical clustering > 7) box plots > 8)histograms > and anything else that can be useful Yes, and so do you: http://www.bioconductor.org/ Enjoy your reading, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact