Recent changes to Bioconductor packages
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@madmanjimmyharvardedu-174
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This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - 05 Feb 2004: reposTools - A bug that was causing packages which failed to install to be registered in the database as an installed package was fixed. JG 05 Feb 2004: getBioC - getBioC will now also check for the minimum required version of R for relLevel of "devel" as well as "release", so that we can check for two tracks of R. JG 05 Feb 2004: Rgraphviz - agopen now will allow a user to manually supply a list of pNode and pEdge objects instead of automatic transformation from a graph object. JG 03 Feb 2004: Rgraphviz - the 'xlab' and 'ylab' parameters now work, and a 'main' parameter was added. JG 03 Feb 2004: impute - new package added to perform imputation for microarray data - JG 03 Feb 2004: simpleaffy - new version checked in. JG
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute • 1.5k views
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@madmanjimmyharvardedu-174
Last seen 10.3 years ago
This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - Feb. 11, 2004: widgetTools - A bug that caused incorrect selection of check boxes was fixed. JZ
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@madmanjimmyharvardedu-174
Last seen 10.3 years ago
This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only. ---------------------------------------------------------------------- - 21 Feb 2004: limma 1.5.1. - now passes R cmd check for R >= 1.7.1 including R1.9.0dev - removed package argument from calls to .C and .Fortran loess hooks in modreg package. - edited package dependencies in DESCRIPTION file. - dimnames and length methods for RGList, MAList and MArrayLM objects - bug fix in duplicateCorrelation() which was not finding the M matrix when object was not an MArrayLM - new argument 'resort.by' for toptable() and topTable() - changes to loessFit() to avoid errors with small numbers of observations - argument 'path' added to readSpotTypes() and readTargets() - check in duplicateCorrelation() for correlation less than -1 - more expository comments added to 2.Classes.Rd - duplicateCorrelation now uses randomizedBlockFit from the statmod package instead of gls from the nlme package. This results in a several- fold increase in speed for duplicateCorrelation and dupcor.series. - dupcor.series now deprecated - getLayout() now has option to guess spacing between duplicate spots - new function blockDiag() to form block diagonal matrices - fix bug in imageplot() which caused overprinting of plots when using par(mfrow) - new function poolVar to Welch-style pooling of sample variances with unequal variances - new functions usersguideURL() and .First.lib() to implement limma entry in Windows drop-down Vignettes menu - bug fix for write.fit() (was failing when adjust p-values with multiple contrasts) - updates to references as linear modelling paper now accepted for publication
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Entering edit mode
@madmanjimmyharvardedu-174
Last seen 10.3 years ago
This is an automated message sent out weekly to report recent changes to Bioconductor packages. Please see the URL http://www.bioconductor.org/changelog.html for a complete history of changes. Unless otherwise noted, these changes apply to the developmental packages only.
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