Dear Vincent, Thanks a lot. I have got GGtools installed in my Mac book pro (with updated Mac OS and Xcode). What I have done: (1). install fink in order to let all unix program run in Mac, following the manual in fink website (http://www.finkproject.org/). (2). then, run "sudo fink install glib glib2-dev". (3). next, log in R, and source("http://bioconductor.org/biocLite.R") biocLite("Ruuid", type="source") # you must install Ruuid from source. biocLite("GGtools") (4). invoke GGtools library(GGtools) I need to mention that all my progresses were got under helps of Mr. Vincent and Martin, especially Vincent has given me much. Thanks a lot. Best, Jian-Feng, 2011/2/7 Vincent Carey <stvjc at="" channing.harvard.edu="">: > Here I will address both operating systems; I missed the linux in the > first email. > > The failure on the linux server concerns lack of curl and XML > infrastructure -- these error messages are reasonably clear: > > * installing *source* package ?RCurl? ... > checking for curl-config... no > Cannot find curl-config > ERROR: configuration failed for package ?RCurl? > * removing ?/ebio/abt6/jmao/rpacks/RCurl? > * installing *source* package ?XML? ... > checking for gcc... gcc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -E > checking for sed... /bin/sed > checking for pkg-config... /usr/bin/pkg-config > checking for xml2-config... no > Cannot find xml2-config > > so you will have to work with a sysadmin to obtain curl development resources > > http://curl.haxx.se/download.html > > and libxml2 development resources from > > http://xmlsoft.org/ > > Ideally the resources will be installed in "standard" locations and > the default source installation activities of biocLite() will lead to > successful installation of RCurl and XML packages. ?Otherwise you will > have to set PKG_CONFIG_PATH suitably. > > For the MacOSX I have asked you to do > > biocLite("Ruuid", type="source") > > if that succeeds, please do > > library(Ruuid) > > and show all the results. ?I suspect the installation will fail and we > will discover what infrastructure elements are missing. > > > On Mon, Feb 7, 2011 at 5:12 AM, Mao Jianfeng <jianfeng.mao at="" gmail.com=""> wrote: >> Dear Vincent, >> >> I have the most upgraded Mac OS with most upgraded Xcode in my mac >> book pro, when I reported the error at the first email. >> >> I am not good at computer. Please help me. >> >> Also, the same problem occurred for Linux server, as I showed in my >> first email. Not only it is in Mac OS. I have not test it in Windows. >> May I do it hours later. >> >> Looking forwards to your reply. >> >> Jian-Feng, >> >> >> >> >> 2011/2/7 Vincent Carey <stvjc at="" channing.harvard.edu="">: >>> http://developer.apple.com/technologies/tools/xcode.html >>> >>> without Xcode (which is distributed with the MacOSX install disk as an >>> additional package) you cannot build R packages from source, and in >>> particular Ruuid is unlikely to be usable. ?You should be able to get >>> a copy of Xcode tools for free from apple.com, but it is if I recall >>> correctly a download of several GB. ?it will be easier for you if you >>> have the installer disk around. >>> >>> On Sun, Feb 6, 2011 at 6:08 PM, Mao Jianfeng <jianfeng.mao at="" gmail.com=""> wrote: >>>> Hi Vincent and Martin, >>>> >>>> Sorry. I am not good at computer. And, I do not understand "Please >>>> ensure that you have a current Xcode >>>> tools image on your mac". I do not know how to do that. >>>> >>>> So, could you please show any lines of unix command to do that? >>>> >>>> And, I want to mention that the error I reported forward also occurred >>>> in linux server as I showed you in my first email. >>>> >>>> >>>> >>>> I do not know if I have a current Xcode tools image on your mac. In >>>> fact, I failed to install Ruuid package in my Mac OS X. >>>> >>>> >>>>> biocLite("Ruuid", type="source") >>>> Using R version 2.12.1, biocinstall version 2.7.4. >>>> Installing Bioconductor version 2.7 packages: >>>> [1] "Ruuid" >>>> Please wait... >>>> >>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/con trib/Ruuid_1.28.0.tar.gz' >>>> Content type 'application/x-gzip' length 71906 bytes (70 Kb) >>>> opened URL >>>> ================================================== >>>> downloaded 70 Kb >>>> >>>> * installing *source* package ?Ruuid? ... >>>> checking for pkg-config... no >>>> checking for glib-config... no >>>> configure: error: No glib package information found >>>> ERROR: configuration failed for package ?Ruuid? >>>> * removing ?/Library/Frameworks/R.framework/Versions/2.12/Resourc es/library/Ruuid? >>>> * restoring previous >>>> ?/Library/Frameworks/R.framework/Versions/2.12/Resources/library/ Ruuid? >>>> >>>> The downloaded packages are in >>>> ? ? ? ??/private/var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp- /RtmpReHOOb/downloaded_packages? >>>> Updating HTML index of packages in '.Library' >>>> Warning message: >>>> In install.packages(pkgs = pkgs, repos = repos, ...) : >>>> ?installation of package 'Ruuid' had non-zero exit status >>>> >>>> >>>> >>>> 2011/2/6 Vincent Carey <stvjc at="" channing.harvard.edu="">: >>>>> I am sorry that you are running into this problem. ?I encounter it >>>>> with a small fraction of mac users when teaching courses. ?If you have >>>>> enough infrastructure to build the Ruuid package from source you will >>>>> probably get around this. ?Please ensure that you have a current Xcode >>>>> tools image on your mac, and then try >>>>> >>>>> biocLite("Ruuid", type="source") >>>>> >>>>> report any error messages you encounter as you go through the same >>>>> steps with GGBase and GGtools. ?Thank you for your patience. >>>>> >>>>> On Sun, Feb 6, 2011 at 4:04 PM, Mao Jianfeng <jianfeng.mao at="" gmail.com=""> wrote: >>>>>> Dear Martin, >>>>>> >>>>>> I followed your advice. But, the error is still there. Please help me. >>>>>> >>>>>> Jian-Feng, >>>>>> >>>>>> >>>>>>> source("http://bioconductor.org/biocLite.R") >>>>>> BioC_mirror = http://www.bioconductor.org >>>>>> Change using chooseBioCmirror(). >>>>>>> biocLite('Ruuid') >>>>>> Using R version 2.12.1, biocinstall version 2.7.4. >>>>>> Installing Bioconductor version 2.7 packages: >>>>>> [1] "Ruuid" >>>>>> Please wait... >>>>>> >>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/m acosx/leopard/contrib/2.12/Ruuid_1.28.0.tgz' >>>>>> Content type 'application/x-gzip' length 84154 bytes (82 Kb) >>>>>> opened URL >>>>>> ================================================== >>>>>> downloaded 82 Kb >>>>>> >>>>>> >>>>>> The downloaded packages are in >>>>>> ? ? ? ?/var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//RtmpR eHOOb/downloaded_packages >>>>>>> biocLite("GGtools") >>>>>> Using R version 2.12.1, biocinstall version 2.7.4. >>>>>> Installing Bioconductor version 2.7 packages: >>>>>> [1] "GGtools" >>>>>> Please wait... >>>>>> >>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/m acosx/leopard/contrib/2.12/GGtools_3.8.4.tgz' >>>>>> Content type 'application/x-gzip' length 63768931 bytes (60.8 Mb) >>>>>> opened URL >>>>>> ================================================= >>>>>> downloaded 60.8 Mb >>>>>> >>>>>> >>>>>> The downloaded packages are in >>>>>> ? ? ? ?/var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//RtmpR eHOOb/downloaded_packages >>>>>>> library(GGtools) >>>>>> Loading required package: Biobase >>>>>> >>>>>> Welcome to Bioconductor >>>>>> >>>>>> ?Vignettes contain introductory material. To view, type >>>>>> ?'openVignette()'. To cite Bioconductor, see >>>>>> ?'citation("Biobase")' and for packages 'citation(pkgname)'. >>>>>> >>>>>> Loading required package: GGBase >>>>>> Loading required package: snpMatrix >>>>>> Loading required package: survival >>>>>> Loading required package: splines >>>>>> Loading required package: RSQLite >>>>>> Loading required package: DBI >>>>>> Error in as.environment(pos) : >>>>>> ?no item called "newtable" on the search list >>>>>> In addition: Warning message: >>>>>> In objects(newtable, all.names = TRUE) : >>>>>> ??newtable? converted to character string >>>>>> Error: package 'GGBase' could not be loaded >>>>>>> sessionInfo() >>>>>> R version 2.12.1 (2010-12-16) >>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>> >>>>>> locale: >>>>>> [1] C/UTF-8/C/C/C/C >>>>>> >>>>>> attached base packages: >>>>>> [1] splines ? stats ? ? graphics ?grDevices utils ? ? datasets ?methods >>>>>> [8] base >>>>>> >>>>>> other attached packages: >>>>>> [1] RSQLite_0.9-4 ? ?DBI_0.2-5 ? ? ? ?snpMatrix_1.14.6 survival_2.36-2 >>>>>> [5] Biobase_2.10.0 >>>>>> >>>>>> loaded via a namespace (and not attached): >>>>>> [1] AnnotationDbi_1.12.0 GSEABase_1.12.2 ? ? ?XML_3.2-0 >>>>>> [4] annotate_1.28.0 ? ? ?graph_1.28.0 ? ? ? ? tools_2.12.1 >>>>>> [7] xtable_1.5-6 >>>>>>> version >>>>>> ? ? ? ? ? ? ? _ >>>>>> platform ? ? ? x86_64-apple-darwin9.8.0 >>>>>> arch ? ? ? ? ? x86_64 >>>>>> os ? ? ? ? ? ? darwin9.8.0 >>>>>> system ? ? ? ? x86_64, darwin9.8.0 >>>>>> status >>>>>> major ? ? ? ? ?2 >>>>>> minor ? ? ? ? ?12.1 >>>>>> year ? ? ? ? ? 2010 >>>>>> month ? ? ? ? ?12 >>>>>> day ? ? ? ? ? ?16 >>>>>> svn rev ? ? ? ?53855 >>>>>> language ? ? ? R >>>>>> version.string R version 2.12.1 (2010-12-16) >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> 2011/2/6 Martin Morgan <mtmorgan at="" fhcrc.org="">: >>>>>>> On 02/06/2011 04:35 AM, Mao Jianfeng wrote: >>>>>>>> Dear listers, >>>>>>>> >>>>>>>> This the second time for me to post this same question in the list. >>>>>>>> >>>>>>>> I am now asking your helps on fix Error when GGtools loading in Mac >>>>>>>> OSX and Linux server. I listed the command I used and the error I got, >>>>>>>> and also the sessionInfo()s for each platform I used. It looks that >>>>>>>> GGtools has been installed, the problem may come from package 'GGBase' >>>>>>>> which can not be installed. >>>>>>>> >>>>>>>> Thanks in advance. >>>>>>>> >>>>>>>> ############################################################# ########## >>>>>>>> # (1) Mac OS X >>>>>>>> # I have the most upgraded OS X, though it was showed "darwin9.8.0" in >>>>>>>> the result of "version" >>>>>>>> # command. I do not know why. >>>>>>>> >>>>>>>>> source("http://bioconductor.org/biocLite.R") >>>>>>>> BioC_mirror = http://www.bioconductor.org >>>>>>>> Change using chooseBioCmirror(). >>>>>>>>> biocLite("GGtools") >>>>>>>> Using R version 2.12.1, biocinstall version 2.7.4. >>>>>>>> Installing Bioconductor version 2.7 packages: >>>>>>>> [1] "GGtools" >>>>>>>> Please wait... >>>>>>>> >>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin /macosx/leopard/contrib/2.12/GGtools_3.8.4.tgz' >>>>>>>> Content type 'application/x-gzip' length 63768931 bytes (60.8 Mb) >>>>>>>> opened URL >>>>>>>> ================================================= >>>>>>>> downloaded 60.8 Mb >>>>>>>> >>>>>>>> >>>>>>>> The downloaded packages are in >>>>>>>> ? ? ? /var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//Rtmp yvXcQ8/downloaded_packages >>>>>>>>> library(GGtools) >>>>>>>> Loading required package: Biobase >>>>>>>> >>>>>>>> Welcome to Bioconductor >>>>>>>> >>>>>>>> ? Vignettes contain introductory material. To view, type >>>>>>>> ? 'openVignette()'. To cite Bioconductor, see >>>>>>>> ? 'citation("Biobase")' and for packages 'citation(pkgname)'. >>>>>>>> >>>>>>>> Loading required package: GGBase >>>>>>>> Loading required package: snpMatrix >>>>>>>> Loading required package: survival >>>>>>>> Loading required package: splines >>>>>>>> Loading required package: RSQLite >>>>>>>> Loading required package: DBI >>>>>>>> Error in as.environment(pos) : >>>>>>>> ? no item called "newtable" on the search list >>>>>>> >>>>>>> THis is an obscure error. Try >>>>>>> >>>>>>> ? biocLite('Ruuid') >>>>>>> >>>>>>> first, and then biocLite("GGtools") >>>>>>> >>>>>>> Martin >>>>>>> >>>>>>>> In addition: Warning message: >>>>>>>> In objects(newtable, all.names = TRUE) : >>>>>>>> ? ?newtable? converted to character string >>>>>>>> Error: package 'GGBase' could not be loaded >>>>>>>> >>>>>>>>> sessionInfo() >>>>>>>> R version 2.12.1 (2010-12-16) >>>>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>>>> >>>>>>>> locale: >>>>>>>> [1] C/UTF-8/C/C/C/C >>>>>>>> >>>>>>>> attached base packages: >>>>>>>> [1] splines ? stats ? ? graphics ?grDevices utils ? ? datasets ?methods >>>>>>>> [8] base >>>>>>>> >>>>>>>> other attached packages: >>>>>>>> ?[1] biomaRt_2.6.0 ? ? ? BSgenome_1.18.3 ? ? Biostrings_2.18.2 >>>>>>>> ?[4] GenomicRanges_1.2.3 IRanges_1.8.8 ? ? ? RSQLite_0.9-4 >>>>>>>> ?[7] DBI_0.2-5 ? ? ? ? ? snpMatrix_1.14.6 ? ?survival_2.36-2 >>>>>>>> [10] Biobase_2.10.0 >>>>>>>> >>>>>>>> loaded via a namespace (and not attached): >>>>>>>> [1] AnnotationDbi_1.12.0 GSEABase_1.12.2 ? ? ?RCurl_1.4-3 >>>>>>>> [4] XML_3.2-0 ? ? ? ? ? ?annotate_1.28.0 ? ? ?graph_1.28.0 >>>>>>>> [7] tools_2.12.1 ? ? ? ? xtable_1.5-6 >>>>>>>>> version >>>>>>>> ? ? ? ? ? ? ? ?_ >>>>>>>> platform ? ? ? x86_64-apple-darwin9.8.0 >>>>>>>> arch ? ? ? ? ? x86_64 >>>>>>>> os ? ? ? ? ? ? darwin9.8.0 >>>>>>>> system ? ? ? ? x86_64, darwin9.8.0 >>>>>>>> status >>>>>>>> major ? ? ? ? ?2 >>>>>>>> minor ? ? ? ? ?12.1 >>>>>>>> year ? ? ? ? ? 2010 >>>>>>>> month ? ? ? ? ?12 >>>>>>>> day ? ? ? ? ? ?16 >>>>>>>> svn rev ? ? ? ?53855 >>>>>>>> language ? ? ? R >>>>>>>> version.string R version 2.12.1 (2010-12-16) >>>>>>>> >>>>>>>> ############################################################# ########## >>>>>>>> # (1) Linux server >>>>>>>> >>>>>>>>> source("http://bioconductor.org/biocLite.R") >>>>>>>> BioC_mirror = http://www.bioconductor.org >>>>>>>> Change using chooseBioCmirror(). >>>>>>>>> library(GGtools) >>>>>>>> Error in library(GGtools) : there is no package called 'GGtools' >>>>>>>>> biocLite("GGtools") >>>>>>>> Using R version 2.12.0, biocinstall version 2.7.4. >>>>>>>> Installing Bioconductor version 2.7 packages: >>>>>>>> [1] "GGtools" >>>>>>>> Please wait... >>>>>>>> >>>>>>>> Installing package(s) into ?/ebio/abt6/jmao/rpacks? >>>>>>>> (as ?lib? is unspecified) >>>>>>>> also installing the dependencies ?RCurl?, ?XML?, ?GGBase?, >>>>>>>> ?rtracklayer?, ?GSEABase? >>>>>>>> >>>>>>>> trying URL 'http://cran.fhcrc.org/src/contrib/RCurl_1.5-0.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 744626 bytes (727 Kb) >>>>>>>> opened URL >>>>>>>> ================================================== >>>>>>>> downloaded 727 Kb >>>>>>>> >>>>>>>> trying URL 'http://cran.fhcrc.org/src/contrib/XML_3.2-0.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 779406 bytes (761 Kb) >>>>>>>> opened URL >>>>>>>> ================================================== >>>>>>>> downloaded 761 Kb >>>>>>>> >>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src /contrib/GGBase_3.10.0.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 50398547 bytes (48.1 Mb) >>>>>>>> opened URL >>>>>>>> ================================================= >>>>>>>> downloaded 48.1 Mb >>>>>>>> >>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src /contrib/rtracklayer_1.10.6.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 1611074 bytes (1.5 Mb) >>>>>>>> opened URL >>>>>>>> ================================================== >>>>>>>> downloaded 1.5 Mb >>>>>>>> >>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src /contrib/GSEABase_1.12.2.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 170133 bytes (166 Kb) >>>>>>>> opened URL >>>>>>>> ================================================== >>>>>>>> downloaded 166 Kb >>>>>>>> >>>>>>>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src /contrib/GGtools_3.8.4.tar.gz' >>>>>>>> Content type 'application/x-gzip' length 63730571 bytes (60.8 Mb) >>>>>>>> opened URL >>>>>>>> ================================================= >>>>>>>> downloaded 60.8 Mb >>>>>>>> >>>>>>>> * installing *source* package ?RCurl? ... >>>>>>>> checking for curl-config... no >>>>>>>> Cannot find curl-config >>>>>>>> ERROR: configuration failed for package ?RCurl? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/RCurl? >>>>>>>> * installing *source* package ?XML? ... >>>>>>>> checking for gcc... gcc >>>>>>>> checking for C compiler default output file name... a.out >>>>>>>> checking whether the C compiler works... yes >>>>>>>> checking whether we are cross compiling... no >>>>>>>> checking for suffix of executables... >>>>>>>> checking for suffix of object files... o >>>>>>>> checking whether we are using the GNU C compiler... yes >>>>>>>> checking whether gcc accepts -g... yes >>>>>>>> checking for gcc option to accept ISO C89... none needed >>>>>>>> checking how to run the C preprocessor... gcc -E >>>>>>>> checking for sed... /bin/sed >>>>>>>> checking for pkg-config... /usr/bin/pkg-config >>>>>>>> checking for xml2-config... no >>>>>>>> Cannot find xml2-config >>>>>>>> ERROR: configuration failed for package ?XML? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/XML? >>>>>>>> ERROR: dependencies ?RCurl?, ?XML? are not available for package ?rtracklayer? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/rtracklayer? >>>>>>>> ERROR: dependency ?XML? is not available for package ?GSEABase? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/GSEABase? >>>>>>>> ERROR: dependency ?GSEABase? is not available for package ?GGBase? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/GGBase? >>>>>>>> ERROR: dependencies ?GGBase?, ?rtracklayer?, ?GSEABase? are not >>>>>>>> available for package ?GGtools? >>>>>>>> * removing ?/ebio/abt6/jmao/rpacks/GGtools? >>>>>>>> >>>>>>>> The downloaded packages are in >>>>>>>> ? ? ? ?/tmp/RtmpMtMIp6/downloaded_packages? >>>>>>>> Warning messages: >>>>>>>> 1: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'RCurl' had non-zero exit status >>>>>>>> 2: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'XML' had non-zero exit status >>>>>>>> 3: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'rtracklayer' had non-zero exit status >>>>>>>> 4: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'GSEABase' had non-zero exit status >>>>>>>> 5: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'GGBase' had non-zero exit status >>>>>>>> 6: In install.packages(pkgs = pkgs, repos = repos, ...) : >>>>>>>> ? installation of package 'GGtools' had non-zero exit status >>>>>>>> >>>>>>>>> sessionInfo() >>>>>>>> R version 2.12.0 (2010-10-15) >>>>>>>> Platform: x86_64-unknown-linux-gnu (64-bit) >>>>>>>> >>>>>>>> locale: >>>>>>>> ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C >>>>>>>> ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 >>>>>>>> ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 >>>>>>>> ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C >>>>>>>> ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C >>>>>>>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >>>>>>>> >>>>>>>> attached base packages: >>>>>>>> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >>>>>>>> >>>>>>>> loaded via a namespace (and not attached): >>>>>>>> [1] tools_2.12.0 >>>>>>>>> version >>>>>>>> ? ? ? ? ? ? ? ?_ >>>>>>>> platform ? ? ? x86_64-unknown-linux-gnu >>>>>>>> arch ? ? ? ? ? x86_64 >>>>>>>> os ? ? ? ? ? ? linux-gnu >>>>>>>> system ? ? ? ? x86_64, linux-gnu >>>>>>>> status >>>>>>>> major ? ? ? ? ?2 >>>>>>>> minor ? ? ? ? ?12.0 >>>>>>>> year ? ? ? ? ? 2010 >>>>>>>> month ? ? ? ? ?10 >>>>>>>> day ? ? ? ? ? ?15 >>>>>>>> svn rev ? ? ? ?53317 >>>>>>>> language ? ? ? R >>>>>>>> version.string R version 2.12.0 (2010-10-15) >>>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Computational Biology >>>>>>> Fred Hutchinson Cancer Research Center >>>>>>> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 >>>>>>> >>>>>>> Location: M1-B861 >>>>>>> Telephone: 206 667-2793 >>>>>>> >>>>>> >>>>>> >>>>>> >>>>