Hello List, I am trying to calculate the minor allele frequency for all the snps in the hapmap database. I am wondering if anyone has done this? I have noticed that there seem to be two ways to attempt this. One using the snpMatrix package and the other using the bioMaRT package. Any help is greatly appreciated. Thanks in advance, Peter [[alternative HTML version deleted]]

i'd simply go to hapmap.org and use hapmart... b On 22 March 2011 22:44, Pete Shepard <peter.shepard at="" gmail.com=""> wrote: > Hello List, > > I am trying to calculate the minor allele frequency for all the snps in the > hapmap database. I am wondering if anyone has done this? I have noticed that > there seem to be two ways to attempt this. One using the snpMatrix package > and the other using the bioMaRT package. Any help is greatly appreciated. > > Thanks in advance, > > Peter > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >