Entering edit mode
Hi everybody,
Is there a way of changing the default parameters of the plots crated
by the
simpleaffy packge - pairwise.comparison plots.
I want to plot two data aets on the same plot, but they all have the
same
three colors (red, orange and yellow). I tried to assign them
different
colours but I always get an error message, that I have multiple
allocations
for the same parameters.
The same happens when I tried to set new titles for my X- and Y-axis.
This is how I tried it:
> plot(significant.rma_w,type="scatter") #scatter plot>
plot(significant.rma_d,type="scatter", col =
c("purple","blue","green"), add=T) #scatter plotError in
plot.xy(xy.coords(x, y), type = type, ...) :
formal argument "col" matched by multiple actual arguments
I get a similar error message when trying to set new captions for the
axes.
> plot(results.rma_w,significant.rma_w, type="scatter",+ main=
"significantly deregulated genes between high and low fractions",+
xlab="high density fraction (w)", ylab ="low density fraction (w)" )
#scatter plotError in plot.default(x, y, xlim = xlim, ylim = ylim, pch
= pch, ...) :
formal argument "xlab" matched by multiple actual arguments
when doing plot.pairwise.comparison.plot I get only this:
> plot.pairwise.comparisonfunction (x, y = NULL, labels =
colnames(means(x)), showPMA = TRUE,
type = "scatter", ...)
{
if (type == "scatter") {
.pcscatterplot(x, y, labels, showPMA, ...)
}
else if (type == "volcano") {
.volcanoplot(x, y, labels, showPMA, ...)
}
else if (type == "ma") {
.maplot(x, y, labels, showPMA, ...)
}
}
<environment: namespace:simpleaffy="">
But when looking for, there is no such real functions to work with as
.pcscatterplot.
I will appreciate any kind of helps
THX
Assa
> R.Version()$platform
[1] "x86_64-pc-linux-gnu"
$arch
[1] "x86_64"
$os
[1] "linux-gnu"
$system
[1] "x86_64, linux-gnu"
$status
[1] ""
$major
[1] "2"
$minor
[1] "12.2"
$year
[1] "2011"
$month
[1] "02"
$day
[1] "25"
$`svn rev`
[1] "54585"
$language
[1] "R"
$version.string
[1] "R version 2.12.2 (2011-02-25)"
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