User: Assa Yeroslaviz

gravatar for Assa Yeroslaviz
Assa Yeroslaviz1.4k
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Location:
Munich, Germany
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2 days, 9 hours ago
Joined:
13 years, 6 months ago
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Posts by Assa Yeroslaviz

<prev • 299 results • page 1 of 30 • next >
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How to apply a linear mixed model onto an RNA-Seq data?
... Our data set contains 10 samples from three different conditions (We also have other timepoints, for now we are though only interested in what happens at the beginning). The metadata is as such: sampleName condition time urea weight C20 CTRL0h 0h 8.0 8.0 C22 CTRL0h 0h 8.0 8.0 C24 CT ...
limma voom rna-seq linear mixed model written 2 days ago by Assa Yeroslaviz1.4k
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Answer: A: Plot ggplot2 and ggbio Images Together
... Woulde `ggarange` from the `ggpubr` package work? see here - [https://www.r-bloggers.com/ggplot2-easy-way-to-mix-multiple-graphs-on-the-same-page/][1] [1]: https://www.r-bloggers.com/ggplot2-easy-way-to-mix-multiple-graphs-on-the-same-page/ ...
written 20 days ago by Assa Yeroslaviz1.4k
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Comment: C: BioMart webservices broken?
... This is really just a side question - why is it important to choose the mirror next to you? what is the difference which mirror site one takes, as long as it is online? ...
written 6 weeks ago by Assa Yeroslaviz1.4k
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Comment: C: Plot genes with similar expression patterns
... why not trying to cluster them based on their expression (heatmap, kmeans, SOM etc.) and than plot the separate groups. DESeq(2) was not meant for such results. ...
written 3 months ago by Assa Yeroslaviz1.4k
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Comment: C: Time-series analysis with DESeq2
... thank you for the time. ...
written 6 months ago by Assa Yeroslaviz1.4k
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Comment: C: Time-series analysis with DESeq2
... Let's say I have this sample information condtion timepoint replicate group Sample_1 WT 0h 1 WT_0h Sample_2 WT 0h 2 WT_0h Sample_3 WT 0h 3 WT_0h Sample_4 WT 1h 1 WT_1h ... ...
written 6 months ago by Assa Yeroslaviz1.4k
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Comment: C: Time-series analysis with DESeq2
... great. Is there an interaction where I can look for genes with significant changes in all time points? I mean a constant trend over all time points? ...
written 6 months ago by Assa Yeroslaviz1.4k
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Comment: C: Time-series analysis with DESeq2
... great. Is there an interaction where I can look for genes with significant changes in all time points? I mean a constant trend over all time points> ...
written 6 months ago by Assa Yeroslaviz1.4k
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Comment: C: Time-series analysis with DESeq2
... great. Is there an interaction where I can look for genes with significant changes in all time points? I mean a constant trendover all time points> ...
written 6 months ago by Assa Yeroslaviz1.4k
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Comment: C: clarification of time-series analysis
... again thanks. It starts to becoming clearer. But than why should someone use the second design? Is there an event where **not controlling** for baseline differences is needed? ...
written 6 months ago by Assa Yeroslaviz1.4k

Latest awards to Assa Yeroslaviz

Student 7 months ago, asked a question with at least 3 up-votes. For deseq2 correcting for batch effects
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Popular Question 10 months ago, created a question with more than 1,000 views. For discrepance in DESeq2 results with different design structures
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Voter 2.2 years ago, voted more than 100 times.
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Appreciated 2.4 years ago, created a post with more than 5 votes. For A: Problem with biomart's listMarts function

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