Question: filterMicroRna function of AgiMicroRna for filtering by sample replicates
0
gravatar for Viki S
8.5 years ago by
Viki S20
Viki S20 wrote:
Hi, I have a question about filterMicroRna in AgiMicroRna package function for filtering probes in Agilent microRNA dataset. >ddPROC = filterMicroRna(ddNORM.micro, dd, control = TRUE, IsGeneDetected = TRUE, wellaboveNEG = FALSE, limIsGeneDetected = 75, limNEG = 25, makePLOT = TRUE, target.micro, verbose = TRUE) If in a dataset there are two or more sample replicates and in the step of filtering probes I want to exclude a probe only if gIsGeneDetected = 0 in all two or three sample replicates. I don't think by 'filterMicroRna' function provides any option for this type of filtering. Are there any suggestions ? Thanks Vickie S [[alternative HTML version deleted]]
probe microrna agimicrorna • 439 views
ADD COMMENTlink written 8.5 years ago by Viki S20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 398 users visited in the last hour