Entering edit mode
Paz Tapia Ramirez
▴
150
@paz-tapia-ramirez-4783
Last seen 10.3 years ago
Hello,
I've been working with the package of bioconductor Agi4x44PreProcess,
but reads data error says "Error in` [. Data.frame `(obj,, columns
[[a]]): undefined columns selected"
My file is targets.txt:
FileName Treatment GErep Subject Array
1.txt ISO 1 Subj 1
2.txt ISO 2 Subj 1
3.txt ISO 1 Subj 1
4.txt ISO 2 Subj 1
And un example of head of 1.txt
file is
FEATURES FeatureNum Row Col
accessions chr_coord SubTypeMask SubTypeName ProbeUID
ControlType ProbeName GeneName SystematicName
Description PositionX PositionY gSurrogateUsed gIsFound
gProcessedSignal gProcessedSigError gNumPixOLHi gNumPixOLLo
gNumPix gMeanSignal gMedianSignal gPixSDev gPixNormIQR
gBGNumPix gBGMeanSignal gBGMedianSignal gBGPixSDev
gBGPixNormIQR gNumSatPix gIsSaturated gIsLowPMTScaledUp
gIsBGNonUnifOL gIsFeatPopnOL gIsBGPopnOL IsManualFlag
gBGSubSignal gBGSubSigError gIsPosAndSignif gPValFeatEqBG
gNumBGUsed gIsWellAboveBG gBGUsed gBGSDUsed ErrorModel
gSpatialDetrendIsInFilteredSet gSpatialDetrendSurfaceValue
SpotExtentX SpotExtentY gNetSignal gMultDetrendSignal
gProcessedBackground gProcessedBkngError IsUsedBGAdjust
gInterpolatedNegCtrlSub gIsInNegCtrlRange gIsUsedInMD
Tab-separated
[[alternative HTML version deleted]]