Hi,
I don't known the argument in makeContrast function of limma
package.
Says:
contrast <- makeContrasts("X - Y", levels=design)
I known that X can be Treatment and Y the Control, but what is
equivalent? some specific columns target in my target file?
Thanks,
Paz
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Dear Paz,
I don't understand your question, or what you are trying to do, but
you
might find it helpful to read the limma User's Guide, and follow one
of
the examples of using makeContrasts().
Best wishes
Gordon
> Date: Mon, 19 Sep 2011 15:12:31 +0000
> From: Paz Tapia Ramirez <verotapia at="" alumnos.utalca.cl="">
> To: <bioconductor at="" r-project.org="">
> Subject: [BioC] makeContrast in limma package
>
>
> Hi,
> I don't known the argument in makeContrast function of limma
package.
>
> Says:
>
> contrast <- makeContrasts("X - Y", levels=design)
>
> I known that X can be Treatment and Y the Control, but what is
> equivalent? some specific columns target in my target file?
> Thanks,
> Paz
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