Entering edit mode
Trying to automate some of the uni's CGH experiments.
Have pretty much installed CGHweb.
Stuck on cghFLasso.
Anyone seen this error before.
>>>>>>>>>>>>>>>error<<<<<<<<<<<<<<<<<<<<<<<
Installing package(s) into
'/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13'
(as 'lib' is unspecified)
trying URL 'http://cran.fhcrc.org/src/contrib/cghFLasso_0.2-1.tar.gz'
Content type 'application/x-gzip' length 129919 bytes (126 Kb)
opened URL
==================================================
downloaded 126 Kb
* installing *source* package 'cghFLasso' ...
** libs
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/include
-fpic -g -O2 -c L2L1VitExact.c -o L2L1VitExact.o
g77 -fpic -g -O2 -c smooth.f90 -o smooth.o
g77: smooth.f90: linker input file unused because linking not done
g77 -shared -L/usr/local/lib64 -o cghFLasso.so L2L1VitExact.o smooth.o
-L/usr/local/lib64/R/lib -lR
g77: smooth.o: No such file or directory
make: *** [cghFLasso.so] Error 1
ERROR: compilation failed for package 'cghFLasso'
* removing
'/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13/cghFLasso'
The downloaded packages are in
'/tmp/RtmpoTkkOD/downloaded_packages'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'cghFLasso' had non-zero exit status
>>>>>>>>>>>>>>>>version<<<<<<<<<<<<<<<<<<<
Using R version 2.13.0, biocinstall version 2.8.4.
platform x86_64-unknown-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 2
minor 13.0
year 2011
month 04
day 13
svn rev 55427
language R
version.string R version 2.13.0 (2011-04-13)
