Dear all, I would like to know if anyone knows a simple way to remove affymetrix gene expression probes that overlap common SNPs (let say MAF>0.05). I can do it manually but I was wondering if anyone has a tool/package that does that automatically. Thanks in advance. Best regards, João Fadista, Ph.D. Post Doc Lund University Diabetes Centre CRC, Malmö University Hospital Entrance 72, building 60, level 13 SE-205 02 Malmö, Sweden Tel: +46 (0)40 391237 e-mail: joao.fadista@med.lu.se<mailto:mikael.akerlund@med.lu.se> [[alternative HTML version deleted]]