Question: Using GTF gene annotation to build a GemomicRanges Object
7.0 years ago by
Guest User • 12k
Guest User • 12k wrote:
Any R based package to integrate GTF format gene annotation to GenomicRanges object? or make a .sqlite object then can be saved (saveFeatures) for future use? really need this tool for RNAseq data analysis. Thank you very much! -- output of sessionInfo(): library(GenomicFeatures) library(Rsamtools) commands used: makeTranscriptsDbfromUCSC saveFeatures("ensGene.sqlite") loadFeatures("ensGene.sqlite") -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENT • link •