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Question: can't downlaod package "beadarrayExampleData"
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gravatar for 易士 路
6.7 years ago by
易士 路10
易士 路10 wrote:
hi, I try to download package "beadarrayExampleData" using windows R. But something is wrong. > biocLite(c("beadarrayExampleData", "beadarrayExampleData")) BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'beadarrayExampleData' 'beadarrayExampleData' Installing package(s) into ¡¥C:/Users/A00460/Documents/R/win- library/2.14¡¦ (as ¡¥lib¡¦ is unspecified) ¸Õ¶}URL 'http://www.bioconductor.org/packages/2.9/data/experiment/bin/ windows/contrib/2.14/beadarrayExampleData_1.0.3.zip' Content type 'application/zip' length 31355200 bytes (29.9 Mb) ¶}±Ò¤F URL downloaded 10.7 Mb¿ù»~¦bread.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : µLªk¶}±Ò³sµ² ¦¹¥~: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : ¤U¸üªºªø«× 11185933 != ³ø§iªºªø«× 31355200 2: In unzip(zipname, exdir = dest) : ±q zip Àɮפ¤¸Ñ¶} 1 ®Éµo¥Í¿ù»~ 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : cannot open compressed file 'beadarrayExampleData/DESCRIPTION', probable reason 'No such file or directory' Is the file unavailable now? Thanks in advance. Louis [[alternative HTML version deleted]]
ADD COMMENTlink modified 6.7 years ago by Dan Tenenbaum ♦♦ 8.2k • written 6.7 years ago by 易士 路10
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gravatar for Dan Tenenbaum
6.7 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Sun, Dec 25, 2011 at 9:39 PM, ?? ? <math_servant at="" hotmail.com=""> wrote: > > > > > hi, I try to download package "beadarrayExampleData" using windows R. > But something is wrong. > biocLite(c("beadarrayExampleData", "beadarrayExampleData")) > BioC_mirror: 'http://www.bioconductor.org' > Using R version 2.14, BiocInstaller version 1.2.1. > Installing package(s) 'beadarrayExampleData' 'beadarrayExampleData' > Installing package(s) into 'C:/Users/A00460/Documents/R/win- library/2.14' > (as 'lib' is unspecified) > ??URL 'http://www.bioconductor.org/packages/2.9/data/experiment/bin/ windows/contrib/2.14/beadarrayExampleData_1.0.3.zip' > Content type 'application/zip' length 31355200 bytes (29.9 Mb) > ??? URL > downloaded 10.7 Mb???read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : > ?????? > ??: Warning messages: > 1: In download.file(url, destfile, method, mode = "wb", ...) : > ????? 11185933 != ????? 31355200 > 2: In unzip(zipname, exdir = dest) : ? zip ????? 1 ????? > 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : > cannot open compressed file 'beadarrayExampleData/DESCRIPTION', probable reason 'No such file or directory' Is the file unavailable now? > Thanks in advance. Louis I was able to install this package using the same command, on R 2.14 on Windows, It sounds like maybe your download was interrupted? If you try again in a fresh R session, do you get the same result? If you are still having a problem, please post the output of sessionInfo(). Dan > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 6.7 years ago by Dan Tenenbaum ♦♦ 8.2k
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gravatar for Dan Tenenbaum
6.7 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
2011/12/26 ?? ? <math_servant at="" hotmail.com="">: > I got this messenge as below > >> sessionInfo() > R version 2.14.0 (2011-10-31) > Platform: i386-pc-mingw32/i386 (32-bit) > locale: > [1] LC_COLLATE=Chinese (Traditional)_Taiwan.950 > [2] LC_CTYPE=Chinese (Traditional)_Taiwan.950 > [3] LC_MONETARY=Chinese (Traditional)_Taiwan.950 > [4] LC_NUMERIC=C > [5] LC_TIME=Chinese (Traditional)_Taiwan.950 > attached base packages: > [1] grid stats graphics grDevices utils datasets methods > [8] base > other attached packages: > [1] sv a_3.0.2 mgcv_1.7-9 corpcor_1.6.0 > [4] beadarray_2.4.1 ggplot2_0.8.9 proto_0.3-9.2 > [7] reshape_0.8.4 plyr_1.6 lumi_2.6.0 > [10] nleqslv_1.9.1 methylumi_2.0.1 Biobase_2.14.0 > [13] BiocInstaller_1.2.1 > loaded via a namespace (and not attached): > ???x[["Version"]] : ?????? > ??: Warning message: > In FUN(c("affy", "affyio", "annotate", "AnnotationDbi", "DBI", "hdrcde", : > DESCRIPTION file of package 'IRanges' is missing or broken > > I think that maybe the point is package 'IRanges'. > But when I download package 'IRanges', it is also interrupted. I suggest reinstalling IRanges; source("http://bioconductor.org/biocLite.R") biocLite("IRanges") If that doesn't work, try uninstalling and reinstaling R. Dan > > Thanks. > > Louis > > > >> Date: Mon, 26 Dec 2011 00:19:40 -0800 >> Subject: Re: [BioC] can't downlaod package "beadarrayExampleData" >> From: dtenenba at fhcrc.org >> To: math_servant at hotmail.com >> CC: bioconductor at r-project.org > >> >> On Sun, Dec 25, 2011 at 9:39 PM, ?? ? <math_servant at="" hotmail.com=""> wrote: >> > >> > >> > >> > >> > hi, I try to download package "beadarrayExampleData" using windows R. >> > But something is wrong. > biocLite(c("beadarrayExampleData", >> > "beadarrayExampleData")) >> > BioC_mirror: 'http://www.bioconductor.org' >> > Using R version 2.14, BiocInstall er version 1.2.1. > >> > Installing package(s) 'beadarrayExampleData' 'beadarrayExampleData' >> > Installing package(s) into >> > 'C:/Users/A00460/Documents/R/win-library/2.14' >> > (as 'lib' is unspecified) >> > ??URL >> > 'http://www.bioconductor.org/packages/2.9/data/experiment/bin/win dows/contrib/2.14/beadarrayExampleData_1.0.3.zip' >> > Content type 'application/zip' length 31355200 bytes (29.9 Mb) >> > ??? URL >> > downloaded 10.7 Mb???read.dcf(file.path(pkgname, "DESCRIPTION"), >> > c("Package", "Type")) : >> > ?????? >> > ??: Warning messages: >> > 1: In download.file(url, destfile, method, mode = "wb", ...) : >> > ????? 11185933 != ????? 31355200 >> > 2: In unzip(zipname, exdir = dest) : ? zip ????? 1 ????? >> > 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) >> > : >> > cannot open compressed file 'beadarrayExampl eData/DESCRIPTION', >> > probable reason 'No such file or directory' Is the file unavailable now? > >> > Thanks in advance. Louis >> >> I was able to install this package using the same command, on R 2.14 >> on Windows, It sounds like maybe your download was interrupted? If you >> try again in a fresh R session, do you get the same result? >> If you are still having a problem, please post the output of >> sessionInfo(). >> Dan >> >> >> > [[alternative HTML version deleted]] >> > >> > >> > _______________________________________________ >> > Bioconductor mailing list >> > Bioconductor at r-project.org >> > https://stat.ethz.ch/mailman/listinfo/bioconductor >> > Search the archives: >> > http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 6.7 years ago by Dan Tenenbaum ♦♦ 8.2k
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