2011/12/26 ?? ? <math_servant at="" hotmail.com="">:
> I got this messenge as below
>
>> sessionInfo()
> R version 2.14.0 (2011-10-31)
> Platform: i386-pc-mingw32/i386 (32-bit)
> locale:
> [1] LC_COLLATE=Chinese (Traditional)_Taiwan.950
> [2] LC_CTYPE=Chinese (Traditional)_Taiwan.950
> [3] LC_MONETARY=Chinese (Traditional)_Taiwan.950
> [4] LC_NUMERIC=C
> [5] LC_TIME=Chinese (Traditional)_Taiwan.950
> attached base packages:
> [1] grid stats graphics grDevices utils datasets
methods
> [8] base
> other attached packages:
> [1] sv a_3.0.2 mgcv_1.7-9 corpcor_1.6.0
> [4] beadarray_2.4.1 ggplot2_0.8.9 proto_0.3-9.2
> [7] reshape_0.8.4 plyr_1.6 lumi_2.6.0
> [10] nleqslv_1.9.1 methylumi_2.0.1 Biobase_2.14.0
> [13] BiocInstaller_1.2.1
> loaded via a namespace (and not attached):
> ???x[["Version"]] : ??????
> ??: Warning message:
> In FUN(c("affy", "affyio", "annotate", "AnnotationDbi", "DBI",
"hdrcde", :
> DESCRIPTION file of package 'IRanges' is missing or broken
>
> I think that maybe the point is package 'IRanges'.
> But when I download package 'IRanges', it is also interrupted.
I suggest reinstalling IRanges;
source("
http://bioconductor.org/biocLite.R")
biocLite("IRanges")
If that doesn't work, try uninstalling and reinstaling R.
Dan
>
> Thanks.
>
> Louis
>
>
>
>> Date: Mon, 26 Dec 2011 00:19:40 -0800
>> Subject: Re: [BioC] can't downlaod package "beadarrayExampleData"
>> From: dtenenba at fhcrc.org
>> To: math_servant at hotmail.com
>> CC: bioconductor at r-project.org
>
>>
>> On Sun, Dec 25, 2011 at 9:39 PM, ?? ? <math_servant at="" hotmail.com="">
wrote:
>> >
>> >
>> >
>> >
>> > hi, I try to download package "beadarrayExampleData" using
windows R.
>> > But something is wrong. > biocLite(c("beadarrayExampleData",
>> > "beadarrayExampleData"))
>> > BioC_mirror: '
http://www.bioconductor.org'
>> > Using R version 2.14, BiocInstall er version 1.2.1.
>
>> > Installing package(s) 'beadarrayExampleData'
'beadarrayExampleData'
>> > Installing package(s) into
>> > 'C:/Users/A00460/Documents/R/win-library/2.14'
>> > (as 'lib' is unspecified)
>> > ??URL
>> > '
http://www.bioconductor.org/packages/2.9/data/experiment/bin/win
dows/contrib/2.14/beadarrayExampleData_1.0.3.zip'
>> > Content type 'application/zip' length 31355200 bytes (29.9 Mb)
>> > ??? URL
>> > downloaded 10.7 Mb???read.dcf(file.path(pkgname, "DESCRIPTION"),
>> > c("Package", "Type")) :
>> > ??????
>> > ??: Warning messages:
>> > 1: In download.file(url, destfile, method, mode = "wb", ...) :
>> > ????? 11185933 != ????? 31355200
>> > 2: In unzip(zipname, exdir = dest) : ? zip ????? 1 ?????
>> > 3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
"Type"))
>> > :
>> > cannot open compressed file 'beadarrayExampl eData/DESCRIPTION',
>> > probable reason 'No such file or directory' Is the file
unavailable now?
>
>> > Thanks in advance. Louis
>>
>> I was able to install this package using the same command, on R
2.14
>> on Windows, It sounds like maybe your download was interrupted? If
you
>> try again in a fresh R session, do you get the same result?
>> If you are still having a problem, please post the output of
>> sessionInfo().
>> Dan
>>
>>
>> > [[alternative HTML version deleted]]
>> >
>> >
>> > _______________________________________________
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>> > Bioconductor at r-project.org
>> >
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>> >
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